Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0704.Seq
(399 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22) 32 0.20
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082) 32 0.20
SB_1429| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29) 27 7.4
SB_57268| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49) 26 9.8
SB_42682| Best HMM Match : OmpA (HMM E-Value=0.72) 26 9.8
SB_27873| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_9062| Best HMM Match : SAP (HMM E-Value=0.8) 26 9.8
SB_47155| Best HMM Match : PHD (HMM E-Value=1.5) 26 9.8
SB_29348| Best HMM Match : PHD (HMM E-Value=1.5) 26 9.8
SB_23149| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_16760| Best HMM Match : OmpA (HMM E-Value=0.72) 26 9.8
SB_13321| Best HMM Match : PHD (HMM E-Value=1.5) 26 9.8
SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2
Query: 2 PVVICLSQRLSHACLSAS 55
PVVICLSQRLSHACLS S
Sbjct: 135 PVVICLSQRLSHACLSIS 152
>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2
Query: 2 PVVICLSQRLSHACLSAS 55
PVVICLSQRLSHACLS S
Sbjct: 111 PVVICLSQRLSHACLSIS 128
>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
Length = 1797
Score = 31.9 bits (69), Expect = 0.20
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 9 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
L CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491
>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
Length = 1304
Score = 31.9 bits (69), Expect = 0.20
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 9 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
L CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 866 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910
>SB_1429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 289 GDXXFKCLPYQLSMV 333
GD FK LPYQLSM+
Sbjct: 65 GDVSFKFLPYQLSMI 79
>SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 67 DTXNGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDG 183
D NG+I F + W + LE IH + TL DG
Sbjct: 263 DFGNGTISSFTGNITRFNVWTLYISLEFIHNMATLVEDG 301
>SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)
Length = 420
Score = 26.6 bits (56), Expect = 7.4
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 28 IKPCMSQCKPY*GDTXNGSIYQFWFLRSYSVTWITVVILELIHAIR-TLTSDGMSAFIRS 204
+KPC S P + +++ +VT+ V + IH R TL+SD M A S
Sbjct: 35 LKPCSSNYAP---SEQSYNVFLAPLYTRATVTYKGPVQSQGIHLNRYTLSSDNMKANNIS 91
Query: 205 KPIDG 219
+P+DG
Sbjct: 92 RPLDG 96
>SB_57268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 912
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 9 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
L CL D A+ ++ + +Y +N+ +LV L ++ CG+S
Sbjct: 512 LMTCLYDKAVFLTDEEYAAKYGRRVNVQMLVEEPELHFIAKCGSS 556
>SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49)
Length = 1205
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 9 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
L CL D A+ ++ + +Y +N+ +LV L ++ CG+S
Sbjct: 437 LMTCLYDKAVFLTDEEYAAKYGRRVNVQMLVEEPELHFIAKCGSS 481
>SB_42682| Best HMM Match : OmpA (HMM E-Value=0.72)
Length = 296
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 9 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
L CL D A+ ++ + +Y +N+ +LV L ++ CG+S
Sbjct: 221 LMTCLYDKAVFLTDEEYAAKYGRRVNVQMLVEEPELHFIAKCGSS 265
>SB_27873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1
Query: 289 GDXXFKCLPYQLSM 330
GD FK LPYQLSM
Sbjct: 91 GDVSFKFLPYQLSM 104
>SB_9062| Best HMM Match : SAP (HMM E-Value=0.8)
Length = 293
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 9 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
L CL D A+ ++ + +Y +N+ +LV L ++ CG+S
Sbjct: 107 LMTCLYDKAVFLTDEEYAAKYGRRVNVQMLVEEPELHFIAKCGSS 151
>SB_47155| Best HMM Match : PHD (HMM E-Value=1.5)
Length = 285
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 9 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
L CL D A+ ++ + +Y +N+ +LV L ++ CG+S
Sbjct: 107 LMTCLYDKAVFLTDEEYAAKYGRRVNVQMLVEEPELHFIAKCGSS 151
>SB_29348| Best HMM Match : PHD (HMM E-Value=1.5)
Length = 212
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 9 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
L CL D A+ ++ + +Y +N+ +LV L ++ CG+S
Sbjct: 32 LMTCLYDKAVFLTDEEYAAKYGRRVNVQMLVEEPELHFIAKCGSS 76
>SB_23149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 9 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
L CL D A+ ++ + +Y +N+ +LV L ++ CG+S
Sbjct: 84 LMTCLYDKAVFLTDEEYAAKYGRRVNVQMLVEEPELHFIAKCGSS 128
>SB_16760| Best HMM Match : OmpA (HMM E-Value=0.72)
Length = 933
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 9 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
L CL D A+ ++ + +Y +N+ +LV L ++ CG+S
Sbjct: 519 LMTCLYDKAVFLTDEEYAAKYGRRVNVQMLVEEPELHFIAKCGSS 563
>SB_13321| Best HMM Match : PHD (HMM E-Value=1.5)
Length = 249
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 9 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
L CL D A+ ++ + +Y +N+ +LV L ++ CG+S
Sbjct: 84 LMTCLYDKAVFLTDEEYAAKYGRRVNVQMLVEEPELHFIAKCGSS 128
>SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1
Query: 289 GDXXFKCLPYQLSM 330
GD FK LPYQLSM
Sbjct: 685 GDVSFKFLPYQLSM 698
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,721,538
Number of Sequences: 59808
Number of extensions: 151421
Number of successful extensions: 310
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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