Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0704.Seq
         (399 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    22   9.5  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    22   9.5  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    22   9.5  

>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 224 GPPSIGFDLIKALIPSLVRVLIACISSRITTVIQVTE*DLRNQN*YIE 81
           G   IG D  +    S   +L++  +S+ T  ++     LRN++ YI+
Sbjct: 418 GDLGIGADSCRRESESSDSILLSPEASKATEAVEFIAEHLRNEDLYIQ 465


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/38 (18%), Positives = 21/38 (55%)
 Frame = +3

Query: 12  YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 125
           Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 223 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 260


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/38 (18%), Positives = 21/38 (55%)
 Frame = +3

Query: 12  YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 125
           Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 223 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 260


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 332,186
Number of Sequences: 2352
Number of extensions: 5775
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 31639662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)