Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0703.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    23   1.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   1.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   1.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.8  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   3.1  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    22   3.1  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   3.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   5.4  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   7.1  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   7.1  

>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 191 GAPGHTKIIPAHKYVLATASSAS 259
           G PGHT I   H    +  SSAS
Sbjct: 66  GLPGHTIIASNHHLAKSDTSSAS 88


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 303 NFLFTFCQTSIKHSIEAELAVANTYLCAGIIFVCPGAPTIKVISDI 166
           N +++ CQ  +   +E  +  AN  +    I VC G    KV+ D+
Sbjct: 146 NTVWSHCQCVLADGVERGILTANRMIPGPSIQVCEGD---KVVIDV 188


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 303 NFLFTFCQTSIKHSIEAELAVANTYLCAGIIFVCPGAPTIKVISDI 166
           N +++ CQ  +   +E  +  AN  +    I VC G    KV+ D+
Sbjct: 146 NTVWSHCQCVLADGVERGILTANRMIPGPSIQVCEGD---KVVIDV 188


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = -3

Query: 312 WNLNFLFTFCQTSIKHSIEAELAVANTYLCAGIIFVCP 199
           +NL  ++ F   SI  ++     + + Y    ++F CP
Sbjct: 51  YNLRRIYYFYCVSITFNVHLLFLLCSGYFTVHLLFYCP 88


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 358 CDEIQLEADTVLSTLYVAKKYIV 426
           CD   +E  TVL  L V   Y++
Sbjct: 356 CDYFTIETKTVLDVLGVTVTYLI 378


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 358 CDEIQLEADTVLSTLYVAKKYIV 426
           CD   +E  TVL  L V   Y++
Sbjct: 282 CDYFTIETKTVLDVLGVTVTYLI 304


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 104 NWQATKPTVRERNAAMFNNQLMSDITFIVGA 196
           N ++ KP + +R  A  NN L    T I+ A
Sbjct: 34  NRRSNKPIMEKRRRARINNSLNELKTLILDA 64


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 365 SSQ*IYFSKARNADGSTSGTSISCLHS 285
           S++  YF +ARN  G+ S T+ SC  S
Sbjct: 368 SNRKFYFKRARN--GTFSTTANSCRSS 392


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 358 CDEIQLEADTVLSTLYVAKK 417
           CDEI  E  T+L   Y  +K
Sbjct: 279 CDEICNEGQTILGISYSLEK 298


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 358 CDEIQLEADTVLSTLYVAKK 417
           CDEI  E  T+L   Y  +K
Sbjct: 279 CDEICNEGQTILGISYSLEK 298


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,186
Number of Sequences: 336
Number of extensions: 2951
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)