Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0703.Seq
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 31 0.11
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.8
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 27 1.8
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 26 3.2
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 4.2
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S... 26 4.2
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 25 5.6
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 25 5.6
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c... 25 7.3
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 25 9.7
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 31.1 bits (67), Expect = 0.11
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +1
Query: 202 THKDYTSTQICVSNCKFSFYAMFYGGLAECKQEIEVPDVEPSAFLA--LLKYIYCDEIQL 375
TH+ Y + + C++ F M G E QE+ V + S+ + +LK++Y D+ +
Sbjct: 314 THR-YPVHRAIMCRCEY-FLDMLAGPFLESNQELPVLSLPFSSSVVEIVLKFLYTDKTDI 371
Query: 376 EADTVLSTLYVA 411
+ L +YVA
Sbjct: 372 APELALDVVYVA 383
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 27.1 bits (57), Expect = 1.8
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +1
Query: 151 VQ*PANV*YYFYCRSPRTHKDYTSTQICVSNCKFSFYAMFYGGLAECKQEIEVP-DVEPS 327
+Q P+ + SP + D ICVS + +F GL QEIE + E S
Sbjct: 453 LQLPSTANSISFLSSPPNNNDIIDKVICVSYANNTILGLFDFGLCAFTQEIEFSNEKEKS 512
Query: 328 AFLALLKY 351
LL +
Sbjct: 513 PIQQLLTF 520
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 214 YTSTQICVSNCKFSFYAMFYGGLAEC 291
+ +C SN KF + +FYG A C
Sbjct: 145 FVGKDVCFSNQKFFYQFLFYGFSAAC 170
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 95 GWRYQEVLANSLATWSHLMTHKVREAR 15
GWR E+L+ SL+ S + K RE R
Sbjct: 827 GWRSPEILSGSLSQQSKEIQVKTREGR 853
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 181 SNIRH*LVIEHSSVSLSN 128
SN+RH + EHSS++ SN
Sbjct: 423 SNVRHLKIAEHSSLAYSN 440
>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 347 SIFTVMKSNWRQILYYQLSM*PKNILYLIWL 439
S+ + ++W +L+ L P I+YLIWL
Sbjct: 38 SVSLTLTASWYTVLWAFLPFWPFLIVYLIWL 68
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 247 KFSFYAMFYGGLAECKQEIEVPDVEPSAFLALLK 348
KF++ Y GLA + +P VE F ALL+
Sbjct: 97 KFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLR 130
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 376 EADTVLSTLYVAKKYIVPHLAK 441
+ VL Y+ ++Y++PH+AK
Sbjct: 100 DVSLVLRGNYLTQRYVIPHMAK 121
>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 315
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 84 PGGAGELAGDVVALDDPQGEGG 19
P G+L GD+V+ P+ +GG
Sbjct: 183 PNEEGQLQGDIVSFSAPREKGG 204
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 24.6 bits (51), Expect = 9.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 419 ILYLIWLRHVSIIWK 463
ILYL+W ++++WK
Sbjct: 67 ILYLLWFSTLTLLWK 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,027
Number of Sequences: 5004
Number of extensions: 43043
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -