Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0703.Seq
         (548 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.          28   0.23 
AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    26   0.94 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    24   3.8  
AY146753-1|AAO12068.1|  311|Anopheles gambiae odorant-binding pr...    23   5.0  
AY146750-1|AAO12065.1|  311|Anopheles gambiae odorant-binding pr...    23   5.0  
AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.          23   8.8  

>AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 0.23
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 16  RASLTLWVIKCD--HVASEFASTSWYRHPGSQLAS 114
           R S+    I CD  H  S+     WY+HP ++L+S
Sbjct: 311 RPSIPSRWIACDTLHAISKVMKECWYQHPAARLSS 345


>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal
           ion/proton exchanger 3 protein.
          Length = 1221

 Score = 25.8 bits (54), Expect = 0.94
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 119 KPTVRERNAAMFNNQLMSDITFIVGAPGHTKI 214
           KPT+ ER    F + +M+ I  IVG  G+  I
Sbjct: 661 KPTMNERIHERFMDHMMAGIEDIVGKTGNYNI 692


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -3

Query: 90  AVPGGAGELAGDVVALDDPQGEGG 19
           AV  G G   GD V    P G GG
Sbjct: 509 AVTPGGGRAEGDKVTFQIPNGGGG 532


>AY146753-1|AAO12068.1|  311|Anopheles gambiae odorant-binding
           protein AgamOBP34 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 250 FSFYAMFYGGLAECKQ 297
           F  Y  +YG L+EC Q
Sbjct: 143 FQCYYQYYGALSECPQ 158


>AY146750-1|AAO12065.1|  311|Anopheles gambiae odorant-binding
           protein AgamOBP37 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 250 FSFYAMFYGGLAECKQ 297
           F  Y  +YG L+EC Q
Sbjct: 143 FQCYYQYYGALSECPQ 158


>AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 215 IPAHKYVLATASSASMLCFMEVWQNVNKKLRF 310
           +P   Y   +     +LC M + QN+ K L F
Sbjct: 126 LPGDDYTECSFIFLYILCTMSIRQNIQKMLGF 157


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,946
Number of Sequences: 2352
Number of extensions: 11152
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)