Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0701.Seq
         (617 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.7  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   4.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.3  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -1

Query: 242 IVVGTEVQEFSLSTLD 195
           +V+GTEV+EF ++ +D
Sbjct: 444 VVLGTEVREFVVNYID 459


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 216 FLNFCANNYLGLSIILKSLKRLER 287
           F+N+   + L     LK+LKRLER
Sbjct: 419 FMNYTDLHDLWGEFTLKALKRLER 442


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 197 PRCSRRIPELLCQQLFRL 250
           P C R   +  C++LFR+
Sbjct: 883 PTCWRECDKATCEKLFRM 900


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,124
Number of Sequences: 336
Number of extensions: 2204
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)