Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0701.Seq
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    65   9e-12
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    53   3e-08
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    34   0.019
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    29   0.54 
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    28   0.94 
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   3.8  
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   5.0  
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   5.0  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    26   5.0  
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    26   5.0  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    25   6.6  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.6  

>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 64.9 bits (151), Expect = 9e-12
 Identities = 29/86 (33%), Positives = 44/86 (51%)
 Frame = +2

Query: 257 HPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAG 436
           H        E ++KYG    S   ICGT  +HKE+E   + F G+   +++   F  NA 
Sbjct: 204 HGPCATKVEEAMQKYGLSTCSSNAICGTYGLHKEVEELTANFVGKPAALVFSQGFSTNAT 263

Query: 437 LFESMLTPEDAVFSDALNHASIIDGS 514
           +F +++ P   + SD LNH SI  G+
Sbjct: 264 VFSTLMCPGSLIISDELNHTSIRFGA 289


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = +2

Query: 257 HPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAG 436
           H ++ EA  + ++ YG G    R I G       LE  L+  H +   +++GSC+ AN  
Sbjct: 190 HKKIREAMHQCIETYGGGAGGTRNIAGHNQHAVRLEKSLADLHQKPAALVFGSCYVANDA 249

Query: 437 LFESM--LTPEDAVFSDALNHASIIDG 511
              ++    P     SD +NHAS+I+G
Sbjct: 250 TLSTLGRKLPNCIFLSDEMNHASMING 276


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 33.9 bits (74), Expect = 0.019
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = +2

Query: 248 LIDHPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDA 427
           L ++  + E A   L++ G G        GTQ  H  LE  ++ F G E  I+Y   F  
Sbjct: 140 LAENKHITECAVATLRECGLGACGPPGFYGTQDKHLRLEKDIASFIGVERAIVYAQSFQT 199

Query: 428 NAGLFESMLTPED-AVFSDALNHA 496
            + +  +     D  V  +A N A
Sbjct: 200 ISSVIPAFSKRGDILVVDEACNFA 223


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +2

Query: 368 RLSQFHGREDTILYGSCFDANAGLFESMLTPEDAVFSDALNHASIIDGSGYARRRNTD 541
           +L + +G +D  + G      +G  E+    +   FSDA  +++ + GSG     N D
Sbjct: 49  KLDELNGAQDEEMRGLNIPGGSGYLENRYGRDKFTFSDAAVNSAGMGGSGIFSHNNAD 106


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 87  VAKLRDVLEDRLQEIKR-AKTWKHERVLTSPQDTKVRVQGAQGE 215
           + K  ++L+   + ++R  K W H RVLT   D + RV+  + E
Sbjct: 545 IEKAAELLDQPKEIVERHLKFWLHHRVLTDIGDDRYRVRETEAE 588


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 123 QEIKRAKTWKHERVLTSPQDTKVRVQGAQGEFLNFC 230
           QE++  K  K  R+ T P+    R++G   E+ NFC
Sbjct: 221 QEMEAMKMLKPLRI-TQPEGVNFRIKGRYIEWQNFC 255


>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 365 NRLSQFHGREDTILYGSCFDANAGLFESMLTPEDAVFSDALNHASIIDGSGYAR 526
           +RL++F G  DT++       + G F S+L  +   ++ +L+H    D S + R
Sbjct: 66  SRLNEFKGHFDTVI-------DIGCFHSILNSDHEPYTASLSHICHSDSSVFLR 112


>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 365 NRLSQFHGREDTILYGSCFDANAGLFESMLTPEDAVFSDALNHASIIDGSGYAR 526
           +RL++F G  DT++       + G F S+L  +   ++ +L+H    D S + R
Sbjct: 66  SRLNEFKGHFDTVI-------DIGCFHSILNSDHEPYTASLSHICHSDSSVFLR 112


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 145 LGNMRGCSHRRKTLRCGSKVLKENS*TSVPTT 240
           L N++     R   RCGSKVLK  +  ++P T
Sbjct: 88  LENLQLSQVNRIKSRCGSKVLKSTTKFTIPKT 119


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 23/86 (26%), Positives = 43/86 (50%)
 Frame = +2

Query: 251 IDHPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDAN 430
           I +   +E AR+G K Y AG +  ++    + IH E+ +   +F  R D + + S + A 
Sbjct: 54  IGYVTALELARKGAKVYLAGRNEEKYQKVMKQIHDEVRHSKIRFL-RLDLLDFESVYQA- 111

Query: 431 AGLFESMLTPEDAVFSDALNHASIID 508
               ES +  E+ +    +N+A I++
Sbjct: 112 ---AESFIAKEEKLHI-LVNNAGIMN 133


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 495 AWFKASENTASSGVSMDSNRPALASKQDP 409
           +W  ASE++A +    D+NRP  +  + P
Sbjct: 317 SWDAASESSAGTTTQGDTNRPDKSKNRSP 345


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 63   VKRQERAGVAKLRDVLEDRLQE 128
            V +  RAGV K +D++ +RLQE
Sbjct: 1253 VVQGSRAGVVKAKDLIFERLQE 1274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,288
Number of Sequences: 5004
Number of extensions: 40405
Number of successful extensions: 136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)