Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0701.Seq
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0921 + 21586034-21586229,21586464-21586576,21586768-215868... 60 1e-09
01_07_0051 - 40759529-40759624,40759728-40759835,40759972-407601... 60 2e-09
01_06_0628 + 30707353-30707548,30707846-30707958,30708090-307081... 60 2e-09
01_07_0052 - 40767252-40767347,40767455-40767562,40767689-407678... 59 2e-09
11_04_0455 + 17903921-17904046,17904149-17904214,17905028-179051... 59 3e-09
01_07_0050 - 40751994-40752086,40752193-40752300,40752501-407526... 50 1e-06
03_02_0387 - 8016399-8016575,8016661-8016788,8017073-8017214,801... 44 1e-04
06_03_1058 + 27254195-27254382,27255041-27255116,27255254-272554... 34 0.078
10_01_0086 - 1064650-1065379,1065796-1065950,1066029-1066141,106... 29 3.9
02_03_0155 + 15805683-15805743,15805824-15806105,15808293-158089... 29 3.9
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399... 29 3.9
05_06_0164 + 26085766-26085799,26086908-26087030,26087406-260875... 28 5.2
05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111 28 6.8
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 27 9.0
06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559... 27 9.0
>10_08_0921 +
21586034-21586229,21586464-21586576,21586768-21586875,
21586967-21587205,21587301-21587399,21587448-21587535,
21587617-21587750,21588274-21588362,21588718-21588751,
21588830-21588898,21589216-21589339
Length = 430
Score = 60.1 bits (139), Expect = 1e-09
Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Frame = +2
Query: 248 LIDHPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDA 427
L HP + AA + ++YG G ICG + HK +E L++ +ED +L + F A
Sbjct: 91 LSSHPAIRHAAVKAAEEYGMGPRGSALICGYTTYHKMVEESLAELKKKEDCLLCPTGFSA 150
Query: 428 N------AGLFESMLT-----PED---AVFSDALNHASIIDGSGYARRR 532
N G S+L ED A+FSDALNHASIIDG R+
Sbjct: 151 NMAVMTALGNISSLLAAGRKPAEDERIAIFSDALNHASIIDGIRLVERQ 199
>01_07_0051 -
40759529-40759624,40759728-40759835,40759972-40760138,
40760670-40760796,40760885-40761046,40761235-40761398,
40761561-40761654,40761736-40761860,40762304-40762449,
40762796-40762884,40763453-40763518,40763824-40763973
Length = 497
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/77 (36%), Positives = 45/77 (58%)
Frame = +2
Query: 284 EGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFESMLTPE 463
E LKKY A SVR G +H ELE +++F G+ IL+G + N+ + +++
Sbjct: 134 ESLKKYSASTCSVRVDGGNTKLHVELEELVARFVGKPAAILFGMGYVTNSAIIPALIGKG 193
Query: 464 DAVFSDALNHASIIDGS 514
+ SD+LNH SI++G+
Sbjct: 194 GLIISDSLNHNSIVNGA 210
>01_06_0628 +
30707353-30707548,30707846-30707958,30708090-30708197,
30708305-30708543,30708774-30708861,30708942-30709075,
30709285-30709498,30709671-30709759,30710194-30710262,
30710560-30710683
Length = 457
Score = 59.7 bits (138), Expect = 2e-09
Identities = 41/109 (37%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Frame = +2
Query: 248 LIDHPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDA 427
L HP + +AA + ++YG G ICG + HK +E L++ +ED +L + F A
Sbjct: 91 LSSHPAIRKAAVKAAQEYGMGPRGSALICGYTTYHKLVEESLAELKKKEDCLLCPTGFSA 150
Query: 428 N------AGLFESMLT----PED----AVFSDALNHASIIDGSGYARRR 532
N G S+L+ P + AVFSDALNHASIIDG R+
Sbjct: 151 NMAVMTALGSVSSILSVGRKPAEGERIAVFSDALNHASIIDGIRLVERQ 199
>01_07_0052 -
40767252-40767347,40767455-40767562,40767689-40767855,
40767930-40768056,40768138-40768299,40768467-40768630,
40768722-40768815,40768892-40769016,40769110-40769255,
40769361-40769449,40769564-40769608,40770165-40770230,
40770332-40770457
Length = 504
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/77 (36%), Positives = 45/77 (58%)
Frame = +2
Query: 284 EGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFESMLTPE 463
E LKKY A SVR G +H ELE +++F G+ IL+G + N+ + +++
Sbjct: 141 ESLKKYSASTCSVRVDGGNTKLHVELEELVARFVGKPAAILFGMGYVTNSAIIPALVGKG 200
Query: 464 DAVFSDALNHASIIDGS 514
+ SD+LNH SI++G+
Sbjct: 201 GLIISDSLNHNSIVNGA 217
>11_04_0455 +
17903921-17904046,17904149-17904214,17905028-17905116,
17905513-17905658,17905743-17905867,17905964-17906057,
17906144-17906307,17906449-17906610,17906683-17906809,
17906854-17906862,17906912-17907078,17907113-17907307,
17907398-17907490
Length = 520
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/77 (36%), Positives = 44/77 (57%)
Frame = +2
Query: 284 EGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFESMLTPE 463
E LKKY SVR GT +H ELE +++F G+ IL+G + N+ + ++
Sbjct: 126 ESLKKYSPSTCSVRVDGGTTKLHTELEELVARFVGKPAAILFGMGYVTNSAIIPCLVGKG 185
Query: 464 DAVFSDALNHASIIDGS 514
+ SD+LNH SI++G+
Sbjct: 186 GLIISDSLNHNSIVNGA 202
>01_07_0050 -
40751994-40752086,40752193-40752300,40752501-40752667,
40752756-40752882,40752984-40753145,40753674-40753837,
40753931-40754024,40754160-40754284,40754387-40754532,
40754676-40754764,40755524-40755589,40755990-40756148
Length = 499
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/77 (32%), Positives = 40/77 (51%)
Frame = +2
Query: 284 EGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFESMLTPE 463
E LKKY A S R G +H ELE +++F + IL + N+ + +++
Sbjct: 137 ESLKKYSASTCSSRVDGGNTQLHIELEELVARFVRKPSAILLAMGYATNSAIIPALIGKG 196
Query: 464 DAVFSDALNHASIIDGS 514
+ SD+LNH SI+ G+
Sbjct: 197 GLIISDSLNHNSIVSGA 213
>03_02_0387 -
8016399-8016575,8016661-8016788,8017073-8017214,
8017301-8017396,8017572-8017712,8017857-8018031,
8018443-8018575,8018661-8018733,8018807-8018900,
8019890-8019981,8020091-8020185,8020267-8020378
Length = 485
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/93 (24%), Positives = 45/93 (48%)
Frame = +2
Query: 248 LIDHPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDA 427
LI + +++++ L+KYG G R GT +H + E ++++F G D+ILY
Sbjct: 124 LIGNEKIIDSCVGSLEKYGVGSCGPRGFYGTIDVHLDCEAKIAKFLGTPDSILYSYGIST 183
Query: 428 NAGLFESMLTPEDAVFSDALNHASIIDGSGYAR 526
+ + D + +D H ++ +G +R
Sbjct: 184 IFSVIPAFCKKGDIIVADEGVHWAVQNGLHLSR 216
>06_03_1058 +
27254195-27254382,27255041-27255116,27255254-27255418,
27255580-27255671,27255713-27255754,27256342-27256387,
27258456-27258683
Length = 278
Score = 34.3 bits (75), Expect = 0.078
Identities = 23/92 (25%), Positives = 45/92 (48%)
Frame = +2
Query: 206 SRRIPELLCQQLFRLIDHPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFH 385
+ R E + ++ RL + + +EA+ ++ G LSSV + + +LE+ LS+ H
Sbjct: 83 TNRDDEQMVMEITRLRNEIDQLEASLR--RQTGEDLSSVSTVDELSQLQLQLESSLSKVH 140
Query: 386 GREDTILYGSCFDANAGLFESMLTPEDAVFSD 481
R+D ++ D + S++ VF+D
Sbjct: 141 ARKDELMSQQLEDMRRMVHYSLIVVAVVVFAD 172
>10_01_0086 -
1064650-1065379,1065796-1065950,1066029-1066141,
1066238-1066345,1066773-1066890,1066996-1067069,
1067595-1067690,1068062-1068455
Length = 595
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 499 GRVVQSVREHRVFRRQHGLEQACVGVETRPVK 404
G+V+ V E + RR+ GLE V V RP+K
Sbjct: 208 GKVLSFVNEAKTMRRKPGLEGQTVVVAKRPMK 239
>02_03_0155 +
15805683-15805743,15805824-15806105,15808293-15808959,
15809440-15810490
Length = 686
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -1
Query: 500 WTRGSKRPRTPRLQASAWTRTGLRWRRNKTRKGLCLRGRGTE 375
WT +K +W+ RWRR K R+GL GR TE
Sbjct: 237 WT--TKEREKAAASRGSWSVGRRRWRRGKWRRGLGGVGRRTE 276
>01_07_0111 - 41137822-41138973,41139453-41139540,41139850-41139969,
41140165-41140211,41140796-41141029,41141305-41141505,
41141506-41143407,41144140-41145303,41145574-41145879
Length = 1737
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 42 QVRHLHEVKRQERAGVAKLRDVLEDR 119
+VRHL V+R E A A LRD++E R
Sbjct: 956 EVRHLENVERLEDARKANLRDMVELR 981
>05_06_0164 +
26085766-26085799,26086908-26087030,26087406-26087525,
26087632-26087696
Length = 113
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 84 GVAKLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKVR 194
G A +++ +++K+ K WKH + +T Q +K+R
Sbjct: 2 GCAGSTPKVDENSKKLKKPKPWKHTQAITPTQLSKMR 38
>05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111
Length = 677
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 93 KLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKV 191
K+RD +E+ + ++ A+ W+ ERV D K+
Sbjct: 340 KMRDEVEEEKKMLQMAEVWREERVQMKLVDAKL 372
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 485 KRPRTPRLQASAWTRTGLRWRRNKTRKGLCLRGRGTETGGSLAP 354
KR R+P W R+ R+++R RGRG S +P
Sbjct: 168 KRSRSPLSPRGGWNRSRRNRSRSRSRSRSIGRGRGRSRSRSRSP 211
>06_03_0813 -
24853119-24854480,24854711-24855442,24855556-24855962,
24856091-24856359,24856681-24856733,24857019-24857078,
24857309-24857363,24858080-24858155,24858225-24858801
Length = 1196
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 178 CGDVSTLSCFQVLALLISCKRSSNTSRSLATPALS 74
C + C Q+ +LISC+ S +S + P L+
Sbjct: 253 CNTMVLKQCLQIWGILISCRYSFPSSEKIRWPVLA 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,700,424
Number of Sequences: 37544
Number of extensions: 279917
Number of successful extensions: 929
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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