Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0701.Seq
(617 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29250| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.4e-07) 135 3e-32
SB_11194| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 6e-09
SB_33803| Best HMM Match : Aminotran_1_2 (HMM E-Value=2.6e-26) 55 5e-08
SB_33262| Best HMM Match : DOMON (HMM E-Value=2.7e-28) 46 3e-05
SB_22866| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_47504| Best HMM Match : RVT_1 (HMM E-Value=1.4e-07) 29 2.3
SB_32655| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008) 29 3.0
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_49352| Best HMM Match : BDS_I_II (HMM E-Value=2.3) 28 5.3
SB_49289| Best HMM Match : Homeobox (HMM E-Value=6e-30) 28 5.3
SB_50335| Best HMM Match : Baculo_11_kDa (HMM E-Value=2.1) 28 7.0
SB_46250| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=2.6) 28 7.0
SB_46007| Best HMM Match : Borrelia_lipo_2 (HMM E-Value=3.7) 28 7.0
SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_17419| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_33841| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_6581| Best HMM Match : HEAT (HMM E-Value=3e-05) 27 9.2
>SB_29250| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.4e-07)
Length = 252
Score = 135 bits (326), Expect = 3e-32
Identities = 63/90 (70%), Positives = 71/90 (78%)
Frame = +2
Query: 263 EVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLF 442
EVV AA+E L KYG GLSSVRFICGTQ IHK LE ++S+FHG ED ILY C+DAN GLF
Sbjct: 4 EVVNAAKEALMKYGNGLSSVRFICGTQDIHKTLEAKISKFHGMEDAILYACCYDANTGLF 63
Query: 443 ESMLTPEDAVFSDALNHASIIDGSGYARRR 532
ES+LT EDAVFSD LNHAS+IDG R +
Sbjct: 64 ESLLTAEDAVFSDELNHASMIDGIRLCRAK 93
>SB_11194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 58.0 bits (134), Expect = 6e-09
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Frame = +2
Query: 284 EGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFESM--LT 457
E + +G G R I GT S H++LE L+Q H +E +L+ SC+ AN ++
Sbjct: 248 ETIDVHGVGAGGTRNISGTSSYHEQLEKVLAQLHQKEAALLFTSCYVANDTTLYTLGKHL 307
Query: 458 PEDAVFSDALNHASIIDG 511
P +FSDA NHAS+I G
Sbjct: 308 PGCLIFSDAGNHASMIQG 325
>SB_33803| Best HMM Match : Aminotran_1_2 (HMM E-Value=2.6e-26)
Length = 391
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/81 (32%), Positives = 46/81 (56%)
Frame = +2
Query: 272 EAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFESM 451
+ A + + K G + S R GT IH ELE +++F G+E +++G F N+ +
Sbjct: 123 DEAEKSVHKNGIAVCSARHEFGTLDIHIELEKMVARFVGKESAMVFGMGFATNSTNIPVL 182
Query: 452 LTPEDAVFSDALNHASIIDGS 514
++ D + SD LNH+S++ G+
Sbjct: 183 VSKGDLIISDELNHSSLVLGA 203
>SB_33262| Best HMM Match : DOMON (HMM E-Value=2.7e-28)
Length = 595
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/59 (33%), Positives = 36/59 (61%)
Frame = +2
Query: 338 TQSIHKELENRLSQFHGREDTILYGSCFDANAGLFESMLTPEDAVFSDALNHASIIDGS 514
T IH ELE +++F G+E +++G F N+ +++ D + SD LNH+S++ G+
Sbjct: 2 TLDIHIELEKMVARFVGKESAMVFGMGFATNSTNIPVLVSKGDLIISDELNHSSLVLGA 60
>SB_22866| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 308 GLSSVRFICGT-QSIHKELENRLSQFHGREDTILYGSCFDANAGLFESMLTPEDAVF 475
G +S + I GT + +H+E + R+ Q + D L+G+ N G + P +A++
Sbjct: 108 GSTSNKMIYGTNEMLHQENQRRVKQQQEKADGFLFGTDAATNVGKQQEKRKPNNALY 164
>SB_47504| Best HMM Match : RVT_1 (HMM E-Value=1.4e-07)
Length = 1002
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 233 QQLFRLIDHPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYG 412
QQ ++ D A G+ + G+ LS + F + +L N + F +DTILY
Sbjct: 552 QQHVQIDDRKSSSARAEFGVPQ-GSILSPMLFNLYVADLQDDLPNTVRSFQYADDTILYS 610
Query: 413 SC 418
SC
Sbjct: 611 SC 612
>SB_32655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 474
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 341 QSIHKELENRLSQFHGREDTILYGSCFDANAGLFESMLTPEDAV 472
Q++ K+L+ +++ + +Y SC N ES+L P+D V
Sbjct: 340 QAVTKQLKETVNEIQDKIGKRIYESCVKGNLPSGESLLEPDDIV 383
>SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008)
Length = 832
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 48 RHLHEVKRQERAGVAKLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKVRV 197
+ L ++KR+ + AK R + R++++KR + +H R + + K+R+
Sbjct: 365 QRLLKLKRERQRAGAKRRAAIRIRMEQLKRKRELEHARKIEFLRRQKLRI 414
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +3
Query: 138 AKTWKHE-----RVLTSPQDTKVRVQGAQGEFLNFCANNYLGLSIILK 266
AK WK ++L++PQ +VRV + + L CAN+ L + +K
Sbjct: 1978 AKQWKERGIGDIKLLSNPQTGRVRVLMRRDQVLKICANHLLTPDMTIK 2025
>SB_49352| Best HMM Match : BDS_I_II (HMM E-Value=2.3)
Length = 312
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = -1
Query: 521 HSLIRLLWTRGSKRPRTPRLQASAWTRTGLRWRRNKTRKGLCLRGRGTETGGS 363
HS + L T G+ P P +W TG + RKG G E G +
Sbjct: 249 HSAVDALITLGAVTPYRPVNHRGSWFLTGYKGAARFPRKGCFPHGSQAENGAT 301
>SB_49289| Best HMM Match : Homeobox (HMM E-Value=6e-30)
Length = 285
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 494 RGSKRPRTPRLQASAWTRTGL 432
RG+ R RT L A AWT TG+
Sbjct: 51 RGNLRTRTQSLSAVAWTSTGI 71
>SB_50335| Best HMM Match : Baculo_11_kDa (HMM E-Value=2.1)
Length = 370
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 404 GLCLRGRGTETGGSLAPCV 348
G C RG GT+ GG+ A C+
Sbjct: 38 GSCQRGNGTKPGGAQATCI 56
>SB_46250| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=2.6)
Length = 190
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -3
Query: 273 STTSG*SISLNSCWHRSSGILLEHLG 196
S T S S NSC H SG LEH G
Sbjct: 128 SHTLSSSSSCNSCQHAQSGYTLEHRG 153
>SB_46007| Best HMM Match : Borrelia_lipo_2 (HMM E-Value=3.7)
Length = 187
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 39 TQVRHLHEVKRQERAGVAKLRDVLEDRLQEIK 134
T R LHE++ Q VAK+RD + D +++ K
Sbjct: 62 TAARGLHELRHQYLDTVAKIRDDVLDHVKQTK 93
>SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 571 SVQFGQISXGIGISAPCIA*SVYYGRVVQSVREHR 467
S Q+ I I I P + SV Y RV+Q++R HR
Sbjct: 382 SRQYTIIFAAIFIVVPFLVISVCYLRVIQTIRSHR 416
>SB_17419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 679
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 218 PELLCQQLFRLIDHPEVVEAAREGLKKYGAGLSSVRFICGTQSI 349
PEL QL + +V +R G+K++ + +S+ IC T SI
Sbjct: 118 PELFLTQLSPRLTPRDVGNISRPGIKRHDSNMSTTS-ICSTDSI 160
>SB_33841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 443 ESMLTPEDAVFSDALNHASIIDGSGYARRRNTD 541
ES L P +A D L+HA +DG+G + D
Sbjct: 51 ESTLIPMEAGREDGLSHAYQVDGNGTINHAHED 83
>SB_6581| Best HMM Match : HEAT (HMM E-Value=3e-05)
Length = 1188
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 120 LQEIKRAKTWKHERVLTSPQDTKVRVQGAQGEFLNFCANNYLGLSIILKS-LKRLER 287
L E+K K W LT P DT + A + F A+N + L + S L +L +
Sbjct: 905 LNELKN-KEWNDIAPLTDPNDTSLPRMYADDTIITFSASNLVELECKINSELSKLHK 960
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,935,089
Number of Sequences: 59808
Number of extensions: 314770
Number of successful extensions: 935
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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