Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0701.Seq
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70311-1|CAA94376.2|  420|Caenorhabditis elegans Hypothetical pr...   133   1e-31
Z81127-5|CAB03390.2|  512|Caenorhabditis elegans Hypothetical pr...    51   8e-07
U80453-3|AAV58885.1|  434|Caenorhabditis elegans Serine palmitoy...    44   7e-05
U80453-2|AAK31446.1|  458|Caenorhabditis elegans Serine palmitoy...    44   7e-05
AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.    29   2.7  
AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   6.1  
Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence ...    27   8.1  

>Z70311-1|CAA94376.2|  420|Caenorhabditis elegans Hypothetical
           protein T25B9.1 protein.
          Length = 420

 Score =  133 bits (321), Expect = 1e-31
 Identities = 63/115 (54%), Positives = 84/115 (73%), Gaps = 1/115 (0%)
 Frame = +2

Query: 248 LIDHPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDA 427
           L  HPEV+ A ++ L+ +GAGLSSVRFICGTQ IHKELE +++QFHG EDTILY +CFDA
Sbjct: 80  LSSHPEVIAAGQKALETHGAGLSSVRFICGTQDIHKELEQKIAQFHGTEDTILYAACFDA 139

Query: 428 NAGLFESMLTPEDAVFSDALNHASIIDGSGYAR-RRNTDPXRDLTELDTX*RTAK 589
           N G+FE M   +D++ SD LNHASIIDG   ++ +R      DL +L++  + A+
Sbjct: 140 NGGIFEVMTGEQDSIISDELNHASIIDGIRLSKAKRLRYKHLDLGDLESKLKEAE 194



 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 25/49 (51%), Positives = 32/49 (65%)
 Frame = +3

Query: 108 LEDRLQEIKRAKTWKHERVLTSPQDTKVRVQGAQGEFLNFCANNYLGLS 254
           L++ L  IK A T+K ERV+   Q   V+V G+    +NFCANNYLGLS
Sbjct: 33  LKNELAGIKNAGTFKTERVIQGRQGVLVKVTGSDKPVINFCANNYLGLS 81


>Z81127-5|CAB03390.2|  512|Caenorhabditis elegans Hypothetical
           protein T22G5.5 protein.
          Length = 512

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 26/80 (32%), Positives = 40/80 (50%)
 Frame = +2

Query: 272 EAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFESM 451
           EAA   + KYG      R   G    HK +E+ ++Q+   ED I++   F  N+    S+
Sbjct: 156 EAAAAHIDKYGINCGGSRQEIGNHVAHKSVESTIAQYLNVEDAIVFPMGFATNSMNIPSL 215

Query: 452 LTPEDAVFSDALNHASIIDG 511
           +     + SD LNHAS++ G
Sbjct: 216 VDKGSLILSDRLNHASLVTG 235


>U80453-3|AAV58885.1|  434|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 1, isoform b protein.
          Length = 434

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 25/89 (28%), Positives = 42/89 (47%)
 Frame = +2

Query: 266 VVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFE 445
           + + A++ + KYG G    R   GT  +H +LE  L++F G E+ +LY   F   +    
Sbjct: 81  IEDRAKQTIFKYGVGSCGPRGFYGTVDVHLDLEKELAKFMGCEEAVLYSYGFATVSSAIP 140

Query: 446 SMLTPEDAVFSDALNHASIIDGSGYARRR 532
           +     D +F D   + +I  G   +R R
Sbjct: 141 AYAKKGDVIFVDEGVNFAIQKGLQASRSR 169


>U80453-2|AAK31446.1|  458|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 1, isoform a protein.
          Length = 458

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 25/89 (28%), Positives = 42/89 (47%)
 Frame = +2

Query: 266 VVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFE 445
           + + A++ + KYG G    R   GT  +H +LE  L++F G E+ +LY   F   +    
Sbjct: 105 IEDRAKQTIFKYGVGSCGPRGFYGTVDVHLDLEKELAKFMGCEEAVLYSYGFATVSSAIP 164

Query: 446 SMLTPEDAVFSDALNHASIIDGSGYARRR 532
           +     D +F D   + +I  G   +R R
Sbjct: 165 AYAKKGDVIFVDEGVNFAIQKGLQASRSR 193


>AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.
          Length = 741

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 287 GLKKYGAGLSSVRFICGTQSIHKELENRLSQFH 385
           G +KY  GL +     G QS+  E +NR   FH
Sbjct: 336 GFQKYRGGLDTAHNQTGHQSVFSEFKNREIMFH 368


>AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical
           protein F53A10.2c protein.
          Length = 811

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 287 GLKKYGAGLSSVRFICGTQSIHKELENRLSQFH 385
           G +KY  GL +     G QS+  E +NR   FH
Sbjct: 406 GFQKYRGGLDTAHNQTGHQSVFSEFKNREIMFH 438


>AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical
           protein F53A10.2a protein.
          Length = 742

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 287 GLKKYGAGLSSVRFICGTQSIHKELENRLSQFH 385
           G +KY  GL +     G QS+  E +NR   FH
Sbjct: 337 GFQKYRGGLDTAHNQTGHQSVFSEFKNREIMFH 369


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
           family protein 5 protein.
          Length = 938

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 156 ERVLTSPQDTKVRVQGAQGEFLN-FCANNY 242
           +R + SP++ +  +  A+GEF+N FC  +Y
Sbjct: 859 DRAVLSPEEEQASMYNAEGEFVNPFCRLSY 888


>Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical
           protein F53B6.2b protein.
          Length = 711

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 66  KRQERAGVAKLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKVRVQ 200
           K ++R  V+K  DVL ++   + +      E +LT+P D K R Q
Sbjct: 423 KNRQRVQVSK-EDVLREQASVLHKMNVSLIEALLTAPNDEKAREQ 466


>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
           protein F53B6.2a protein.
          Length = 1045

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 66  KRQERAGVAKLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKVRVQ 200
           K ++R  V+K  DVL ++   + +      E +LT+P D K R Q
Sbjct: 757 KNRQRVQVSK-EDVLREQASVLHKMNVSLIEALLTAPNDEKAREQ 800


>U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence of
           males (increasedx chromosome loss) protein 10 protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 18  LRNVLNG-TQVRHLHE-VKRQERAGVAKLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKV 191
           L+NV+N  T+ R ++E + +Q+   +  ++  LE  +   K+     +E VLTSP+  K 
Sbjct: 193 LKNVVNEYTETRQINEELDKQKEEAILHIQ-ALEKEMLTGKKTIEHLNEEVLTSPEQLKQ 251

Query: 192 RVQ 200
            ++
Sbjct: 252 EME 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,139,481
Number of Sequences: 27780
Number of extensions: 224232
Number of successful extensions: 650
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)