Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0699.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   8e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 80   1e-15
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           70   1e-12
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              60   2e-09
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.15 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.27 
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              28   4.4  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     27   7.6  

>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 8e-21
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 189
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = +3

Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 365
           TIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 24  TIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = +1

Query: 187 MGKGSFKYAWVLDKLKAERERGI 255
           MGKGSFKYAWVLDKLKAERERGI
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGI 23


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 7/134 (5%)
 Frame = +1

Query: 127 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGIQSILLSGSSKLASTMLP 306
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER++G  ++ +  ++    T   
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKG-NTVEVGRAAFDTDTKHF 224

Query: 307 SLM-------LLDTEISSRT*SQEPLRLIALCSSVAAGTGEFEAGISKNGQTRXHALLAF 465
           +L+        +   IS  T  Q  L ++     ++A  GEFE G  + GQTR HA+LA 
Sbjct: 225 TLLDAPGHKSFVPNMISGAT--QADLGVLV----ISARKGEFETGFERGGQTREHAMLAK 278

Query: 466 TLRXKQLIVGVNKM 507
           T   K L++ VNKM
Sbjct: 279 TAGVKHLVILVNKM 292



 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 21/48 (43%), Positives = 33/48 (68%)
 Frame = +3

Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIXSCR 398
           T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+ S R
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISAR 256


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 23/43 (53%), Positives = 34/43 (79%)
 Frame = +3

Query: 258 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILV 43



 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 23/40 (57%), Positives = 27/40 (67%)
 Frame = +1

Query: 388 VAAGTGEFEAGISKNGQTRXHALLAFTLRXKQLIVGVNKM 507
           V A TGEFEAG    GQTR HA+L  +L   QLIV +NK+
Sbjct: 44  VDAITGEFEAGFESGGQTREHAILVRSLGVTQLIVAINKL 83


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 24/63 (38%), Positives = 29/63 (46%)
 Frame = +1

Query: 67   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 247  RGI 255
            RGI
Sbjct: 1987 RGI 1989


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXSC 395
           + + +ID+PGH DF   +       D A+++  C
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDC 132


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 58  THINIVVIGHVDSGKSTTTGHLIY 129
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLI 386
           IID PGH  F      G+S  D A+L+
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILV 708


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLI 386
           + I+D PGH+DF ++     +  D  +++
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVV 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,385,834
Number of Sequences: 59808
Number of extensions: 317973
Number of successful extensions: 885
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)