Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0699.Seq
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 196 9e-51
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 196 9e-51
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 188 2e-48
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 152 2e-37
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 2e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 114 5e-26
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 114 5e-26
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 101 3e-22
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 48 3e-06
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 48 3e-06
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 48 3e-06
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 47 8e-06
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 47 8e-06
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 36 0.025
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.18
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.18
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.24
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.55
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.55
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 31 0.55
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 1.7
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 1.7
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 2.9
U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical pr... 29 2.9
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 28 3.9
AL023815-5|CAA19428.2| 366|Caenorhabditis elegans Hypothetical ... 28 3.9
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 28 5.1
Z72502-2|CAA96588.1| 423|Caenorhabditis elegans Hypothetical pr... 27 6.7
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 27 6.7
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 27 8.9
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 27 8.9
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 27 8.9
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 196 bits (478), Expect = 9e-51
Identities = 107/158 (67%), Positives = 119/158 (75%), Gaps = 3/158 (1%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERERGIQ---SILLSGSSKLASTMLPSLMLLDTEISSRT*SQEPLRLIALCSSVA 393
DKLKAERERGI ++ ++K T++ + D + T + + + + VA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLV---VA 117
Query: 394 AGTGEFEAGISKNGQTRXHALLAFTLRXKQLIVGVNKM 507
GTGEFEAGISKNGQTR HALLA TL KQLIV NKM
Sbjct: 118 CGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKM 155
Score = 98.7 bits (235), Expect = 2e-21
Identities = 42/47 (89%), Positives = 46/47 (97%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIXSC 395
TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+ +C
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVAC 118
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 196 bits (478), Expect = 9e-51
Identities = 107/158 (67%), Positives = 119/158 (75%), Gaps = 3/158 (1%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERERGIQ---SILLSGSSKLASTMLPSLMLLDTEISSRT*SQEPLRLIALCSSVA 393
DKLKAERERGI ++ ++K T++ + D + T + + + + VA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLV---VA 117
Query: 394 AGTGEFEAGISKNGQTRXHALLAFTLRXKQLIVGVNKM 507
GTGEFEAGISKNGQTR HALLA TL KQLIV NKM
Sbjct: 118 CGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKM 155
Score = 98.7 bits (235), Expect = 2e-21
Identities = 42/47 (89%), Positives = 46/47 (97%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIXSC 395
TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+ +C
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVAC 118
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 188 bits (458), Expect = 2e-48
Identities = 102/152 (67%), Positives = 115/152 (75%), Gaps = 3/152 (1%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERERGIQ---SILLSGSSKLASTMLPSLMLLDTEISSRT*SQEPLRLIALCSSVA 393
DKLKAERERGI ++ ++K T++ + D + T + + + + VA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLV---VA 117
Query: 394 AGTGEFEAGISKNGQTRXHALLAFTLRXKQLI 489
GTGEFEAGISKNGQTR HALLA TL KQL+
Sbjct: 118 CGTGEFEAGISKNGQTREHALLAQTLGVKQLV 149
Score = 98.7 bits (235), Expect = 2e-21
Identities = 42/47 (89%), Positives = 46/47 (97%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIXSC 395
TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+ +C
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVAC 118
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 152 bits (368), Expect = 2e-37
Identities = 70/71 (98%), Positives = 70/71 (98%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERERGI 255
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
Score = 98.7 bits (235), Expect = 2e-21
Identities = 42/47 (89%), Positives = 46/47 (97%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIXSC 395
TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+ +C
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVAC 118
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 2e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAER 243
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 114 bits (274), Expect = 5e-26
Identities = 68/155 (43%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Frame = +1
Query: 52 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 231
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 232 KAERERGIQSILLSGSSKLASTMLPSLMLLDTEISSRT*SQ---EPLRLIALCSSVAAGT 402
+ ERERG+ + G + T ++LLD S + A V A T
Sbjct: 227 EEERERGVTMDI--GRTSF-ETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATT 283
Query: 403 GEFEAGISKNGQTRXHALLAFTLRXKQLIVGVNKM 507
GEFE G GQT+ HALL +L QLIV VNK+
Sbjct: 284 GEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKL 318
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 114 bits (274), Expect = 5e-26
Identities = 68/155 (43%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Frame = +1
Query: 52 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 231
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 232 KAERERGIQSILLSGSSKLASTMLPSLMLLDTEISSRT*SQ---EPLRLIALCSSVAAGT 402
+ ERERG+ + G + T ++LLD S + A V A T
Sbjct: 245 EEERERGVTMDI--GRTSF-ETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATT 301
Query: 403 GEFEAGISKNGQTRXHALLAFTLRXKQLIVGVNKM 507
GEFE G GQT+ HALL +L QLIV VNK+
Sbjct: 302 GEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKL 336
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 101 bits (242), Expect = 3e-22
Identities = 59/159 (37%), Positives = 89/159 (55%), Gaps = 5/159 (3%)
Frame = +1
Query: 46 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 225
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 226 KLKAERERGIQSILLSGSSKLASTMLPSLMLLDTE-----ISSRT*SQEPLRLIALCSSV 390
ERE+G +++ + + T +LD + + L L +
Sbjct: 164 TNDEEREKG-KTVEVGRA--YFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLV--I 218
Query: 391 AAGTGEFEAGISKNGQTRXHALLAFTLRXKQLIVGVNKM 507
+A GEFE G + GQTR H++L T K L++ VNKM
Sbjct: 219 SARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKM 257
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIXSCR 398
T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+ S R
Sbjct: 174 TVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISAR 221
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 48.4 bits (110), Expect = 3e-06
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+
Sbjct: 99 TINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILV 142
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 49 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 219
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 220 LDKLKAER 243
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 48.4 bits (110), Expect = 3e-06
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+
Sbjct: 100 TINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILV 143
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 49 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 219
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 220 LDKLKAER 243
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 48.4 bits (110), Expect = 3e-06
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+
Sbjct: 100 TINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILV 143
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 49 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 219
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 220 LDKLKAER 243
L+ A+R
Sbjct: 106 LEYETAKR 113
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 47.2 bits (107), Expect = 8e-06
Identities = 23/44 (52%), Positives = 29/44 (65%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
TI++A +E+ + D PGH DFIKNMI GTSQ D AVL+
Sbjct: 95 TINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLV 138
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 55 KTHINIVVIGHVDSGKSTTT 114
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 47.2 bits (107), Expect = 8e-06
Identities = 23/44 (52%), Positives = 29/44 (65%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
TI++A +E+ + D PGH DFIKNMI GTSQ D AVL+
Sbjct: 95 TINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLV 138
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 55 KTHINIVVIGHVDSGKSTTT 114
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 35.5 bits (78), Expect = 0.025
Identities = 27/63 (42%), Positives = 32/63 (50%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73
Query: 247 RGI 255
RGI
Sbjct: 74 RGI 76
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGID 147
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 30.7 bits (66), Expect = 0.72
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIXSC 395
T+++ K + + + + +ID+PGH DF + D A+++ C
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDC 143
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 31.1 bits (67), Expect = 0.55
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIXSC 395
T+++ K + + + + +ID+PGH DF + D A+++ C
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDC 143
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 32.3 bits (70), Expect = 0.24
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 183
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.55
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 19 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 129
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.55
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 19 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 129
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 31.1 bits (67), Expect = 0.55
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -1
Query: 503 LFTPTMSCLXRRVKASKACXRV*PFLEIPASNSPVPAATDEHSAISLRGSC 351
LF PT+SC+ + AS P + PA N VP AT S +L +C
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVSGTTLTVTC 62
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 145 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 145 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 64 INIVVIGHVDSGKSTTT 114
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 64 INIVVIGHVDSGKSTTT 114
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical
protein K09H11.1 protein.
Length = 985
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 332 ISVSRSIND-GNIVLASFELPESNIDCIPR 246
+S ++I+D GNI+ +F P DCIPR
Sbjct: 197 VSSQQAIHDLGNILKLNFSYPPETRDCIPR 226
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLI 386
IID PGH F G+S D A+L+
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILV 579
>AL023815-5|CAA19428.2| 366|Caenorhabditis elegans Hypothetical
protein H28O16.2 protein.
Length = 366
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 410 NSPVPAATDEHSAISLRGSCDHVLDEISVSRSINDGNIVL 291
N+P+ AA ++AIS R + +L+ S S+ D I +
Sbjct: 275 NAPLQAARSRYAAISRRPALSGILNRFKTSGSVPDNAIAM 314
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLI 386
VT +D PGH F G AD VL+
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLV 234
>Z72502-2|CAA96588.1| 423|Caenorhabditis elegans Hypothetical
protein C08B6.5 protein.
Length = 423
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 504 FVYSYDELFXPKGESEQGMLTGLTVLRDTS 415
F +YD F P+ S GLTV+RDTS
Sbjct: 272 FYSTYDIEFLPQAVSVWDKRQGLTVIRDTS 301
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 297 YVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
+V+ +D PGH + M+ G + D A L+
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLL 157
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +3
Query: 300 VTIIDAPGHRDFI--KNMITGTSQA 368
V IID+ G RDFI KN+ GT+ A
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGTADA 97
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +3
Query: 258 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
+ I + Y + IID PGH +F M AD V++
Sbjct: 189 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVM 231
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +3
Query: 258 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
+ I + Y + IID PGH +F M AD V++
Sbjct: 64 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVM 106
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,133,243
Number of Sequences: 27780
Number of extensions: 236969
Number of successful extensions: 723
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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