Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0699.Seq
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 171 3e-43
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 171 3e-43
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 171 3e-43
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 171 3e-43
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 97 9e-21
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 92 2e-19
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 51 6e-07
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 50 1e-06
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 33 0.17
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 33 0.17
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 31 0.51
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 29 1.5
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 29 1.5
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 29 2.0
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 29 2.0
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 29 2.0
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 29 2.7
At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative ... 29 2.7
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 28 3.6
At5g02010.1 68418.m00120 expressed protein contains Pfam profile... 28 3.6
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 28 3.6
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 28 3.6
At5g62310.1 68418.m07822 incomplete root hair elongation (IRE) /... 28 4.7
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 28 4.7
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 28 4.7
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 28 4.7
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 27 6.2
At5g06810.1 68418.m00770 mitochondrial transcription termination... 27 6.2
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 27 6.2
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 27 6.2
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 171 bits (416), Expect = 3e-43
Identities = 96/158 (60%), Positives = 111/158 (70%), Gaps = 3/158 (1%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 223 DKLKAERERGIQ---SILLSGSSKLASTMLPSLMLLDTEISSRT*SQEPLRLIALCSSVA 393
DKLKAERERGI ++ ++K T++ + D + T + + + + S
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDST- 119
Query: 394 AGTGEFEAGISKNGQTRXHALLAFTLRXKQLIVGVNKM 507
TG FEAGISK+GQTR HALLAFTL KQ+I NKM
Sbjct: 120 --TGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKM 155
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 171 bits (416), Expect = 3e-43
Identities = 96/158 (60%), Positives = 111/158 (70%), Gaps = 3/158 (1%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 223 DKLKAERERGIQ---SILLSGSSKLASTMLPSLMLLDTEISSRT*SQEPLRLIALCSSVA 393
DKLKAERERGI ++ ++K T++ + D + T + + + + S
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDST- 119
Query: 394 AGTGEFEAGISKNGQTRXHALLAFTLRXKQLIVGVNKM 507
TG FEAGISK+GQTR HALLAFTL KQ+I NKM
Sbjct: 120 --TGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKM 155
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 171 bits (416), Expect = 3e-43
Identities = 96/158 (60%), Positives = 111/158 (70%), Gaps = 3/158 (1%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 223 DKLKAERERGIQ---SILLSGSSKLASTMLPSLMLLDTEISSRT*SQEPLRLIALCSSVA 393
DKLKAERERGI ++ ++K T++ + D + T + + + + S
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDST- 119
Query: 394 AGTGEFEAGISKNGQTRXHALLAFTLRXKQLIVGVNKM 507
TG FEAGISK+GQTR HALLAFTL KQ+I NKM
Sbjct: 120 --TGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKM 155
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 171 bits (416), Expect = 3e-43
Identities = 96/158 (60%), Positives = 111/158 (70%), Gaps = 3/158 (1%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 223 DKLKAERERGIQ---SILLSGSSKLASTMLPSLMLLDTEISSRT*SQEPLRLIALCSSVA 393
DKLKAERERGI ++ ++K T++ + D + T + + + + S
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDST- 119
Query: 394 AGTGEFEAGISKNGQTRXHALLAFTLRXKQLIVGVNKM 507
TG FEAGISK+GQTR HALLAFTL KQ+I NKM
Sbjct: 120 --TGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKM 155
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 96.7 bits (230), Expect = 9e-21
Identities = 58/154 (37%), Positives = 85/154 (55%), Gaps = 4/154 (2%)
Frame = +1
Query: 58 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 237
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297
Query: 238 ERERGIQ---SILLSGSSKLASTMLPSLMLLDTEISSRT*SQEPLRLIALCSSVAAGTGE 408
ERERGI ++ S + +L S D + + + I + + A G
Sbjct: 298 ERERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILV---IDASVGA 354
Query: 409 FEAGISK-NGQTRXHALLAFTLRXKQLIVGVNKM 507
FEAG GQTR HA + +Q+IV +NKM
Sbjct: 355 FEAGFDNLKGQTREHARVLRGFGVEQVIVAINKM 388
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 92.3 bits (219), Expect = 2e-19
Identities = 58/158 (36%), Positives = 87/158 (55%), Gaps = 6/158 (3%)
Frame = +1
Query: 52 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 231
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 232 KAERERGIQSILLSGSSKLASTMLPSL------MLLDTEISSRT*SQEPLRLIALCSSVA 393
+ ER +G + + ST L + IS SQ + ++ ++
Sbjct: 158 EEERLKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGA--SQADIGVLV----IS 211
Query: 394 AGTGEFEAGISKNGQTRXHALLAFTLRXKQLIVGVNKM 507
A GEFE G + GQTR H LA TL +LIV VNKM
Sbjct: 212 ARKGEFETGYERGGQTREHVQLAKTLGVSKLIVVVNKM 249
Score = 54.8 bits (126), Expect = 4e-08
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIXSCR 398
T+++ FET TI+DAPGH+ ++ NMI+G SQAD VL+ S R
Sbjct: 166 TVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 213
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 50.8 bits (116), Expect = 6e-07
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIXS 392
TI+ A ++ET + +D PGH D++KNMITG +Q D A+L+ S
Sbjct: 129 TINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVS 174
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 40 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 174
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 49.6 bits (113), Expect = 1e-06
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIXS 392
TI A ++ET+K + +D PGH D++KNMITG +Q D +L+ S
Sbjct: 117 TIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVS 162
Score = 32.7 bits (71), Expect = 0.17
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 49 KEKTHINIVVIGHVDSGKSTTT 114
+ K H+N+ IGHVD GK+T T
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLT 84
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 32.7 bits (71), Expect = 0.17
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGG 141
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
Y + +ID+PGH DF + T +D A+++
Sbjct: 74 YSLNLIDSPGHMDFCSEVSTAARLSDGALVL 104
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 32.7 bits (71), Expect = 0.17
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 55 KTHINIVVIGHVDSGKSTTTGHLIYKCG 138
K + NI ++ H+D+GK+TTT ++Y G
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG 121
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 31.1 bits (67), Expect = 0.51
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 288 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIXSC 395
++Y + +ID+PGH DF + D A+++ C
Sbjct: 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDC 131
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCG 138
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 258 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
+ + L + Y I+D PGH +F M AD AVLI
Sbjct: 197 MSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLI 239
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 258 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
+ + L + Y I+D PGH +F M AD AVLI
Sbjct: 197 MSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLI 239
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
NI + H+DSGK+T T +++ G R E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTG----RIHEIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 247 RGI 255
+GI
Sbjct: 117 KGI 119
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
Y V IID PGH DF + D A+L+
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILV 163
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIXSCRY 401
+ID PGH F G+S D A+L+ ++
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVVDIKH 736
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
NI + H+DSGK+T T +++ G R E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTG----RIHEIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 247 RGI 255
+GI
Sbjct: 117 KGI 119
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
Y V IID PGH DF + D A+L+
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILV 163
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 282 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
E S Y + +ID PGH DF + S A+L+
Sbjct: 131 EASGYLLNLIDTPGHVDFSYEVSRSLSACQGALLV 165
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 31 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK 150
D K EK N +I H+D GKST L+ G I K
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK 95
>At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative
similar to GT-2 factor [Arabidopsis thaliana GI:416490
Length = 619
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 419 PASNSPVPAATDEHSAISLRGSCDHVLDEISVSRSINDGN 300
P + +P P +D+ S + R D VL I++ RSI++ N
Sbjct: 440 PKNQNPKPPKSDDKSDLGKRWPKDEVLALINIRRSISNMN 479
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 165
N +I H+D GKST L+ G + R +++
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDMKE 120
>At5g02010.1 68418.m00120 expressed protein contains Pfam profile
PF03759: Domain of unknown function (DUF315)
Length = 546
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 398 PAATDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDCIPR 246
P E+S L+ D + + +IN +I LA E+PES ++ +PR
Sbjct: 236 PGGLQENSRKQLQHKRDCTNQILKAAMAIN--SITLADMEIPESYLESLPR 284
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLI 386
+ID PGH F G+S D A+L+
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILV 139
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLI 386
+ID PGH F G+S D A+L+
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILV 798
>At5g62310.1 68418.m07822 incomplete root hair elongation (IRE) /
protein kinase, putative nearly identical to IRE
(incomplete root hair elongation) [Arabidopsis thaliana]
gi|6729346|dbj|BAA89783
Length = 1168
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 344 VLDEISVSRSINDGNIVLASFELPESNIDCIPRSRSAFSL 225
V D +S S ++ S + +DC+PRS++ FSL
Sbjct: 549 VADSARLSNSSRQEDLDEISQRCSDDMLDCVPRSQNTFSL 588
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 285 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
T + +V+ +D PGH + M+ G + D A+L+
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLL 157
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 285 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
T + +V+ +D PGH + M+ G + D A+L+
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLL 157
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLI 386
+ +ID PGH F G++ D A+L+
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILV 586
>At5g24280.1 68418.m02856 expressed protein ; expression supported
by MPSS
Length = 1634
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 494 PTMSCLXRRVKASKACXRV*PFLEIPASNSPVPAATD 384
P M R K+C RV F+++ A SP P+ TD
Sbjct: 494 PFMQRGNRASTLQKSCRRVKCFVDLDAGFSPTPSKTD 530
>At5g06810.1 68418.m00770 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 1141
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +1
Query: 118 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGIQSILLS 273
H + G+D + I K KEA+E+ S++ + K+KA + G + LS
Sbjct: 174 HHVLCYSGVDPKRIGKIFKEAREV--FSYETGVLASKIKAYEDLGFSRLFLS 223
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 297 YVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
+V+ +D PGH + M+ G + D A+LI
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLI 149
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +3
Query: 279 FETSKY----YVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
FE SK +V+ +D PGH + M+ G + D A+L+
Sbjct: 112 FENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLL 151
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,561,358
Number of Sequences: 28952
Number of extensions: 225709
Number of successful extensions: 702
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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