Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0698.Seq
         (625 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015529D0 Cluster: PREDICTED: similar to DNA-direct...    34   2.4  
UniRef50_O45198 Cluster: Putative uncharacterized protein; n=1; ...    34   3.2  
UniRef50_Q03UC6 Cluster: Putative uncharacterized protein; n=1; ...    33   4.2  
UniRef50_UPI0001509F03 Cluster: hypothetical protein TTHERM_0045...    33   5.6  
UniRef50_UPI0000DA295B Cluster: PREDICTED: hypothetical protein;...    33   7.3  
UniRef50_Q4RHU5 Cluster: Chromosome 8 SCAF15044, whole genome sh...    33   7.3  
UniRef50_Q0UFK6 Cluster: Peptidyl-prolyl cis-trans isomerase; n=...    33   7.3  
UniRef50_UPI0000ECCDDE Cluster: UPI0000ECCDDE related cluster; n...    32   9.7  
UniRef50_Q4SDG9 Cluster: Chromosome undetermined SCAF14638, whol...    32   9.7  
UniRef50_Q0UYG0 Cluster: Putative uncharacterized protein; n=1; ...    32   9.7  

>UniRef50_UPI00015529D0 Cluster: PREDICTED: similar to DNA-directed
           RNA polymerase II largest subunit; n=7; Theria|Rep:
           PREDICTED: similar to DNA-directed RNA polymerase II
           largest subunit - Mus musculus
          Length = 354

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 121 KKKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRKXTKK 2
           KKK TK  + + KK   KEE ++    +E   KK+K  KK
Sbjct: 275 KKKKTKKEEEEEKKKMKKEEEEEEEEEEEEKKKKKKKKKK 314


>UniRef50_O45198 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 368

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 121 KKKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRKXTK 5
           KKK +K  KN+G    + + +DD+   ++P  KK+K  K
Sbjct: 160 KKKKSKKSKNKGSSSDSSDSSDDSSDDEKPKKKKKKSKK 198


>UniRef50_Q03UC6 Cluster: Putative uncharacterized protein; n=1;
           Lactobacillus brevis ATCC 367|Rep: Putative
           uncharacterized protein - Lactobacillus brevis (strain
           ATCC 367 / JCM 1170)
          Length = 72

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 295 PTFWFVFNFIFYFLXRFPTSAXSRLWFXNFLXRIXSL 405
           P FW    F+  FL  F   A S +WF NF+  I  L
Sbjct: 6   PKFWVSLIFLINFLALFSDPALSFIWFINFIIGIAGL 42


>UniRef50_UPI0001509F03 Cluster: hypothetical protein
           TTHERM_00456800; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00456800 - Tetrahymena
           thermophila SB210
          Length = 794

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -1

Query: 121 KKKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRKXTK 5
           KK+ TK++K +  K  AKEET +  +    ASKK + +K
Sbjct: 230 KKEETKNQKKEEPKQQAKEETKNQKKEQPKASKKEEESK 268



 Score = 33.1 bits (72), Expect = 5.6
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -1

Query: 118 KKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRKXTK 5
           K+ TK++K +  K + KEE   +V+ +EP S K++  K
Sbjct: 247 KEETKNQKKEQPKASKKEEESKSVKKEEPKSVKKEDAK 284


>UniRef50_UPI0000DA295B Cluster: PREDICTED: hypothetical protein;
           n=1; Rattus norvegicus|Rep: PREDICTED: hypothetical
           protein - Rattus norvegicus
          Length = 127

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 124 PKKKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRKXTKK 2
           P KK TK++  + KK   +EE ++    +E   KK+  TKK
Sbjct: 40  PTKKKTKTKTKKKKKKKEEEEEEEEESEEEEEKKKKTKTKK 80


>UniRef50_Q4RHU5 Cluster: Chromosome 8 SCAF15044, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 8 SCAF15044, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 687

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 118 KKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRK 14
           KK TK  +N  KKVA ++E +D ++  E    KRK
Sbjct: 127 KKETKEEENIDKKVAKRKEKEDKMKKKEEEKAKRK 161


>UniRef50_Q0UFK6 Cluster: Peptidyl-prolyl cis-trans isomerase; n=1;
           Phaeosphaeria nodorum|Rep: Peptidyl-prolyl cis-trans
           isomerase - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 504

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 121 KKKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRK 14
           KK+  K +KN G+ VA  E    A + D P+S K+K
Sbjct: 326 KKQAKKLKKNDGQAVAGAEPAKKAEKADAPSSDKKK 361


>UniRef50_UPI0000ECCDDE Cluster: UPI0000ECCDDE related cluster; n=1;
           Gallus gallus|Rep: UPI0000ECCDDE UniRef100 entry -
           Gallus gallus
          Length = 85

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -1

Query: 118 KKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRKXTKK 2
           KK  K +K + KKV++K++   A++  +   KK+K T++
Sbjct: 18  KKKKKKKKKKKKKVSSKKKKKKAIKSKKKKKKKKKNTRR 56


>UniRef50_Q4SDG9 Cluster: Chromosome undetermined SCAF14638, whole
           genome shotgun sequence; n=2; Tetraodontidae|Rep:
           Chromosome undetermined SCAF14638, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 713

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 121 KKKXTKSRKNQGKKVAA--KEETDDAVRXDEPASKKRKXTKK 2
           KKK +K    +GKK     K+E DDAV  +E   KK+K   K
Sbjct: 645 KKKKSKEEDEKGKKKHKHRKKEKDDAVAAEEREKKKKKSRSK 686


>UniRef50_Q0UYG0 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 1219

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 121 KKKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRKXTKK 2
           +KK  KSR++   K +  + T++ V    PASKKRK   K
Sbjct: 341 RKKPKKSRQSSSTKASTSKNTEEVVEA-PPASKKRKRKSK 379


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 278,730,312
Number of Sequences: 1657284
Number of extensions: 2906822
Number of successful extensions: 8721
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8545
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)