Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0698.Seq
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230...    28   5.2  

>04_04_0378 -
           24822436-24822521,24822623-24822738,24823010-24823092,
           24823772-24823918,24824004-24824051,24824153-24824353,
           24824981-24825152,24825235-24825299,24825813-24825939,
           24826436-24826528,24826608-24826696,24826804-24826950,
           24827047-24827359,24827474-24828048
          Length = 753

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 118 KKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRK 14
           ++     +NQGKK A+ EE D AV     A  K K
Sbjct: 121 ERSENQNQNQGKKEASPEECDQAVEGLSTAKAKAK 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,580,756
Number of Sequences: 37544
Number of extensions: 81398
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)