Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0698.Seq
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)               31   0.57 
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)                 31   0.57 
SB_54936| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_36647| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_31997| Best HMM Match : zf-C2H2 (HMM E-Value=1.4013e-45)            28   7.1  
SB_18986| Best HMM Match : RecR (HMM E-Value=2.1)                      27   9.4  

>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
          Length = 654

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 118 KKXTKSRKNQGKKVAAKEE--TDDAVRXDEPASKKRKXTK 5
           K  TKS+   G K  AKEE  + D+   DEP +K+ K  K
Sbjct: 78  KMPTKSKLKNGTKTKAKEESSSSDSSSEDEPPAKRPKSAK 117


>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
          Length = 440

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 118 KKXTKSRKNQGKKVAAKEE--TDDAVRXDEPASKKRKXTK 5
           K  TKS+   G K  AKEE  + D+   DEP +K+ K  K
Sbjct: 321 KMPTKSKLKNGTKTKAKEESSSSDSSSEDEPPAKRPKSAK 360



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 124 PKKKXT-KSRKNQGKKVAAKEETDDAVRXDEPASKK 20
           PKKK   K +K Q K+ ++ EE D +   +E   KK
Sbjct: 193 PKKKADNKGKKTQAKQESSSEEDDSSDEEEEKPKKK 228


>SB_54936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -1

Query: 124 PKKKXTK-SRKNQGKKVAAKEETD--DAVRXDEPASK 23
           PKKK TK  RK   KK  +KEE +     R DE A K
Sbjct: 135 PKKKKTKKKRKRSSKKKTSKEEAEAGSPTREDEAAEK 171


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 124  PKKKXTKSRKNQGKKVAAKEETDD-AVRXDEPASKKRKXTKK 2
            PK + TK+R  +GKK  A+  +DD  V  D P ++  +  KK
Sbjct: 1484 PKAEVTKTRSARGKKQLAEPISDDIPVVEDAPKTRSTRGMKK 1525


>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 121 KKKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRKXTKK 2
           KKK  K +K++ K+ ++ E    +   ++  SKK K  KK
Sbjct: 260 KKKNKKEKKHKSKETSSSESNKSSDSEEKAKSKKNKKDKK 299


>SB_36647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 121 KKKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRKXTKK 2
           KKK  + +K Q K+   KEE ++    +E   ++RK  ++
Sbjct: 12  KKKKKRKKKKQKKQKKKKEEEEEEEEENEEEERRRKRRRR 51



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 121 KKKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRKXTKK 2
           KK+  K +K Q KK   +EE ++    +E   K+R+  ++
Sbjct: 15  KKRKKKKQKKQKKKKEEEEEEEEENEEEERRRKRRRRRRR 54


>SB_31997| Best HMM Match : zf-C2H2 (HMM E-Value=1.4013e-45)
          Length = 1091

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 97  KNQGKKVAAKEETDDAVRXDEPASKKRKXTKK 2
           K +GK+   K++ D  V  DE   KKRK  +K
Sbjct: 738 KKEGKRRRKKKKEDGDVDEDEGGKKKRKRRRK 769


>SB_18986| Best HMM Match : RecR (HMM E-Value=2.1)
          Length = 190

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 100 RKNQGKKVAAKEETDDAVRXDEPASKKRKXTKK 2
           R+ +   V   E+ DDAV+ DE   KK++  +K
Sbjct: 112 RRRKPTPVQDAEQKDDAVKGDEKKGKKKRIIQK 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,728,123
Number of Sequences: 59808
Number of extensions: 90003
Number of successful extensions: 217
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)