Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0698.Seq
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical ...    34   0.095
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.      32   0.38 
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge...    32   0.38 
AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical ...    31   0.67 
AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical...    29   2.0  
U97006-5|AAC47967.1|  222|Caenorhabditis elegans Hypothetical pr...    29   2.7  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    28   4.7  

>AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical
           protein W09G12.7 protein.
          Length = 368

 Score = 33.9 bits (74), Expect = 0.095
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 121 KKKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRKXTK 5
           KKK +K  KN+G    + + +DD+   ++P  KK+K  K
Sbjct: 160 KKKKSKKSKNKGSSSDSSDSSDDSSDDEKPKKKKKKSKK 198


>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
          Length = 1359

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 121 KKKXTKSRKNQGKKVAAKEETDDAVRXDE-PASKKRKXTKK 2
           ++K  KS+KN+ K V  + ET +    DE P+ K +K  KK
Sbjct: 162 ERKVKKSKKNKEKSVKKRAETSEESDEDEKPSKKSKKGLKK 202


>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
           related protein 1 protein.
          Length = 1359

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 121 KKKXTKSRKNQGKKVAAKEETDDAVRXDE-PASKKRKXTKK 2
           ++K  KS+KN+ K V  + ET +    DE P+ K +K  KK
Sbjct: 162 ERKVKKSKKNKEKSVKKRAETSEESDEDEKPSKKSKKGLKK 202


>AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.3 protein.
          Length = 679

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 118 KKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRKXTKK 2
           KK +KS K   KK A KEE++++   +E    K+K + K
Sbjct: 347 KKNSKSPKKTPKKTAVKEESEESSGDEEEEVVKKKKSSK 385



 Score = 30.7 bits (66), Expect = 0.88
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = -1

Query: 124 PKKKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRKXTKK 2
           PKKK    RK+  KK AA EE+D+     E + KKR   +K
Sbjct: 516 PKKKGKTPRKSS-KKSAAVEESDNEEEDVEESPKKRTSPRK 555



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 124 PKKKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRKXTKK 2
           PKKK TKS +   KK AAKEE+++    +E   +     KK
Sbjct: 406 PKKK-TKSPRKSSKKSAAKEESEEESSDNEEEEEVDYSPKK 445


>AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical
           protein F36H12.3 protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 121 KKKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRKXTKK 2
           ++K  KS+K++GKK   KEE  +  + ++   K+ K  +K
Sbjct: 69  EEKKEKSKKSEGKKSDKKEEKKEEKKEEKEDKKEEKKEEK 108


>U97006-5|AAC47967.1|  222|Caenorhabditis elegans Hypothetical
           protein C13F10.7 protein.
          Length = 222

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 121 KKKXTKSRKNQGK-KVAAKEETDDAVRXDEPASKKRKXTKK 2
           KK   K RK + K K   ++++DD+   DE   +KRK +K+
Sbjct: 147 KKLEKKERKKERKEKRRRRDDSDDSSDSDEEEDRKRKKSKE 187


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 121 KKKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRKXTK 5
           K+K  K  + + +K+  +++ D     DE A KK++ +K
Sbjct: 172 KRKEKKRLEKENRKIKEEDDEDSDDEDDEKAKKKKRKSK 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,669,712
Number of Sequences: 27780
Number of extensions: 76735
Number of successful extensions: 288
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)