Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0698.Seq
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai...    31   0.82 

>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
           Pfam profiles  PF00270:DEAD/DEAH box helicase and
           PF00271:  Helicase conserved C-terminal domain;
           identical to cDNA RH27 helicase, partial GI:4033334
          Length = 633

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 124 PKKKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRKXTK 5
           PKKK  K  K +G      +  D+AV  +EP  KK+K  K
Sbjct: 59  PKKKKKKKNKKRGD---TDDGEDEAVAEEEPKKKKKKNKK 95



 Score = 30.7 bits (66), Expect = 0.82
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 124 PKKKXTKSRKNQGKKVAAKEETDDAVRXDEPASKKRKXTK 5
           PKKK  K++K Q +     EE +     +EP  KK+K  K
Sbjct: 86  PKKKKKKNKKLQQRGDTNDEEDEVIAEEEEPKKKKKKQRK 125


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,315,387
Number of Sequences: 28952
Number of extensions: 69235
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)