Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0696.Seq
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         32   0.076
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   8.8  

>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 31.9 bits (69), Expect = 0.076
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 168 FLVLHTYKFINIFFAFTCKIVDITKYIVNYHG 263
           + ++H   +I+I F F   +VDI  Y+ NY+G
Sbjct: 27  YKIIHRLLYISIIFLFLNYVVDIVCYVKNYNG 58


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 457 FFAIDLLIKLALSSVNXTGLLKFWLXTY 540
           F A  + +KLA +  N   LLK WL +Y
Sbjct: 346 FRAHQVPLKLARTDTNQRNLLKDWLNSY 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,339
Number of Sequences: 5004
Number of extensions: 53039
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)