Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0696.Seq
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33764| Best HMM Match : DUF454 (HMM E-Value=8.8)                    29   4.0  
SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019)              29   4.0  
SB_11169| Best HMM Match : WD40 (HMM E-Value=5.5001e-42)               29   4.0  
SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04)                    28   7.0  
SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_33764| Best HMM Match : DUF454 (HMM E-Value=8.8)
          Length = 124

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 241 FVISTILHVNAKNMLINLYVCNTKNIVKYIILY 143
           F+I+ ++ +N KN +I + V NT +    II+Y
Sbjct: 87  FIITIVIIINNKNNIITITVTNTNSSSIIIIIY 119


>SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019)
          Length = 1097

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 103 TDLITDTRL*MPLHTKLYI--LLYFWCYTRISLST 201
           TDL+  T L  P HT L I  LLY  C+T + + T
Sbjct: 118 TDLVVQTLLYRPCHTDLVIQTLLYRPCHTDLVMQT 152



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 103 TDLITDTRL*MPLHTKLYI--LLYFWCYTRISLST 201
           TDL+  T L  P HT L I  L Y  CYT + + T
Sbjct: 76  TDLVIQTLLYRPCHTDLVIQTLSYRPCYTDLVIQT 110


>SB_11169| Best HMM Match : WD40 (HMM E-Value=5.5001e-42)
          Length = 383

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 241 FVISTILHVNAKNMLINLYVCNTKNIVKYIILY 143
           F+I+ ++ +N KN +I + V NT +    II+Y
Sbjct: 346 FIITIVIIINNKNNIITITVTNTNSSSIIIIIY 378


>SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04)
          Length = 447

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 589 LWRFIQGVTLSPN*PKNKLXTKILKVQXNLHSIKRALSANLWQRN 455
           LW+++   T+S   PK+K+ T    +Q  + S+  + ++N +Q N
Sbjct: 299 LWKYVDDTTISETVPKSKVST----IQAAVDSLASSAASNKFQLN 339


>SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 589 LWRFIQGVTLSPN*PKNKLXTKILKVQXNLHSIKRALSANLWQRN 455
           LW+++   T+S   PK+K+ T    +Q  + S+  + ++N +Q N
Sbjct: 561 LWKYVDDTTISETVPKSKVST----IQAAVDSLASSSASNKFQLN 601


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,470,089
Number of Sequences: 59808
Number of extensions: 354494
Number of successful extensions: 664
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)