Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0696.Seq
(618 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK126213-1|BAC86488.1| 262|Homo sapiens protein ( Homo sapiens ... 37 0.066
AK124803-1|BAC85953.1| 180|Homo sapiens protein ( Homo sapiens ... 34 0.46
AK127397-1|BAC86958.1| 130|Homo sapiens protein ( Homo sapiens ... 31 2.5
AK128416-1|BAC87430.1| 303|Homo sapiens protein ( Homo sapiens ... 31 3.3
AK128694-1|BAC87575.1| 291|Homo sapiens protein ( Homo sapiens ... 31 4.3
AK129846-1|BAC85241.1| 236|Homo sapiens protein ( Homo sapiens ... 29 9.9
>AK126213-1|BAC86488.1| 262|Homo sapiens protein ( Homo sapiens
cDNA FLJ44225 fis, clone THYMU3006168. ).
Length = 262
Score = 36.7 bits (81), Expect = 0.066
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +2
Query: 29 RRFIVNNTTYSIKLCFGT*YSRTTLLI*SQIHVFKCLYIQNYIFYYI--FGVTH--V*VY 196
R ++ + T I +C Y+ + + S IHV+ C+YI YI +I + H VY
Sbjct: 150 RAYVYSYTRICIHICIFI-YTYVCMCVCSCIHVYTCVYIHIYIGMHICVYSYMHRYTYVY 208
Query: 197 QHIF-CIHM 220
HI+ CIHM
Sbjct: 209 IHIYICIHM 217
>AK124803-1|BAC85953.1| 180|Homo sapiens protein ( Homo sapiens
cDNA FLJ42813 fis, clone BRCAN2012355. ).
Length = 180
Score = 33.9 bits (74), Expect = 0.46
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = -1
Query: 426 VYIFRYLCVGIYICI*SLR*LISETYIA*HI*MMEHKTFKFIEIRL*SYIIIYYVHDN*L 247
VY + Y+CV I+IC+ + + TY+ HI M + T+ ++ I +I ++ +
Sbjct: 61 VYTYTYVCVHIHICVHIYLCMYTHTYMCAHIHMCVY-TYIYVYIYTHIHICVHINMYVSI 119
Query: 246 YIL*Y----LRFYM*MQKIC**TYTC 181
Y+ Y + YM +C TY C
Sbjct: 120 YVYIYTCIQIYIYMYTLYVCTYTYMC 145
Score = 31.9 bits (69), Expect = 1.9
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Frame = +2
Query: 119 IHVFKCLYIQNY----IFYYIFGVTHV*VYQHI-FCIHM*NRRYHKIYS*LSWT*YIMM* 283
+H++ C+Y Y I ++ +V +Y HI C+H+ Y IY + I +
Sbjct: 75 VHIYLCMYTHTYMCAHIHMCVYTYIYVYIYTHIHICVHI--NMYVSIYVYIYTCIQIYIY 132
Query: 284 DHNLISMNLNVLCSIIYMCYAI*VSLISYLKL*MQMYIPTHKYL 415
+ L +C+ I++C I S+I Y+ + + + P + Y+
Sbjct: 133 MYTLYVCTYTYMCTYIHIC--IHTSII-YVCVYIHIQCPLNIYI 173
>AK127397-1|BAC86958.1| 130|Homo sapiens protein ( Homo sapiens
cDNA FLJ45488 fis, clone BRTHA2003759. ).
Length = 130
Score = 31.5 bits (68), Expect = 2.5
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = +2
Query: 119 IHVFKCLYIQNY----IFYYIFGVTHV*VYQHIF 208
I+++ CLYI Y IF YI+ H+ +Y HIF
Sbjct: 51 IYIYICLYIYLYIYLYIFTYIYIYLHIFIYLHIF 84
Score = 29.5 bits (63), Expect = 9.9
Identities = 20/88 (22%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Frame = +2
Query: 119 IHVFKCLYIQNYIFYYIFGVTHV*VYQHIF-CIHM*NRRYHKIYS*LSWT*YIMM*DHNL 295
I+++ +YI YI++YIF ++ ++ +I+ C+++ Y IY + YI + H
Sbjct: 25 IYIYVYVYIYLYIYFYIFTYIYLYIFIYIYICLYI----YLYIYLYIFTYIYIYL--HIF 78
Query: 296 ISMNLNV-LCSIIYMCYAI*VSLISYLK 376
I +++ + +C +Y+ + + + Y++
Sbjct: 79 IYLHIFIYICICLYIFIYVFIYINIYMR 106
Score = 29.5 bits (63), Expect = 9.9
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +3
Query: 120 YTSLNAFTYKIIYFTIFLVLHTYKFINI-FFAFTCKIVDITKY---IVNYHGH 266
Y L FTY IY IF+ LH + +I I + F + I Y + N HG+
Sbjct: 62 YIYLYIFTYIYIYLHIFIYLHIFIYICICLYIFIYVFIYINIYMRGLQNIHGN 114
Score = 27.1 bits (57), Expect(2) = 8.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 119 IHVFKCLYIQNYIFYYIFGVTHV*VYQHIF 208
I++F ++I YIF YI+ +V +Y +I+
Sbjct: 9 IYMFMYIFIFIYIFIYIYIYVYVYIYLYIY 38
Score = 21.4 bits (43), Expect(2) = 8.4
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = +2
Query: 329 IYMCYAI*VSLISYLKL*MQMYIPTHKYLKMYTLLF 436
IY+ I + + Y+ L + +YI T+ Y+ ++ ++
Sbjct: 45 IYLYIFIYIYICLYIYLYIYLYIFTYIYIYLHIFIY 80
>AK128416-1|BAC87430.1| 303|Homo sapiens protein ( Homo sapiens
cDNA FLJ46559 fis, clone THYMU3040126. ).
Length = 303
Score = 31.1 bits (67), Expect = 3.3
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +2
Query: 119 IHVFKCLYIQNYIFYYIFGVTHV*VYQHIFCIH 217
+H++ C+Y+ + + Y + +V +Y H + IH
Sbjct: 11 VHIYTCIYVYTHTYIYTYTCMYVCIYSHTY-IH 42
Score = 30.7 bits (66), Expect = 4.3
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Frame = +2
Query: 119 IHVFKCLYIQNYIFYYIFGVTHV*VYQHI-FCI--HM*NRRYHKIYS*LSWT*YIMM*DH 289
IH+ C+Y + Y + + TH ++ H+ C+ H+ Y +Y+ + + + H
Sbjct: 93 IHMCVCVYTRIYTYTCVCVCTHAYIHTHVCVCVHTHIYIHMYVCVYTRIYTYTCVCVCTH 152
Query: 290 NLISMNLNVLCS---IIYMCYAI*VSLISYLKL*MQMYIPTHKYLKMY 424
I ++ V I+MC + + +Y M + + TH Y+ MY
Sbjct: 153 AYIHTHVYVCVHTHIYIHMCVCVYTRIYTYTC--MCVCVHTHIYIHMY 198
>AK128694-1|BAC87575.1| 291|Homo sapiens protein ( Homo sapiens
cDNA FLJ46861 fis, clone UTERU3011092. ).
Length = 291
Score = 30.7 bits (66), Expect = 4.3
Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 13/129 (10%)
Frame = +3
Query: 114 HRYTSLNAFTYKIIYFTIFLVLHTYKFINIFFAFTCKIVDITKYIVNYHGHN-------- 269
H Y + F Y ++ +++ +H Y +I + +++T + I +I H H
Sbjct: 84 HAYAYICIFIYTHMHTYMYIHMHAYAYIYV-YSYTRICIHICIFICT-HMHTYMCIHMYT 141
Query: 270 -I**CKXXXXXXXXXTFYV--PSFICVMQYKFR**VISSFRC--KCIYQHTNI*KCILCY 434
I C YV +++CV Y I + C CI+ +T I +CI Y
Sbjct: 142 CIHICVFMCTMHAYVYSYVHMHAYVCVHMYTCVHMCIHKYTCMHMCIHMYTCIHRCIFIY 201
Query: 435 SQIML*VFL 461
+ + + V++
Sbjct: 202 TYVYICVYI 210
Score = 30.7 bits (66), Expect = 4.3
Identities = 25/129 (19%), Positives = 61/129 (47%), Gaps = 3/129 (2%)
Frame = +2
Query: 86 YSRTTLLI*SQIHVFKCLYIQNYIFYYIFGVTHV*VYQHIFCIHM*NRRYHKIYS*LSWT 265
YS T + I I +F C ++ Y+ +++ H+ V+ ++ + + Y +
Sbjct: 114 YSYTRICI--HICIFICTHMHTYMCIHMYTCIHICVFMCTMHAYVYSYVHMHAYVCVHMY 171
Query: 266 *YIMM*DHNLISMNLNV-LCSIIYMCYAI*--VSLISYLKL*MQMYIPTHKYLKMYTLLF 436
+ M H M++ + + + I+ C I V + Y+ + + +++ + Y+ MYT ++
Sbjct: 172 TCVHMCIHKYTCMHMCIHMYTCIHRCIFIYTYVYICVYIHIYICIHVCVYSYIHMYTYVY 231
Query: 437 PNNVVGISL 463
+ +GI +
Sbjct: 232 IHVYIGIHM 240
Score = 29.5 bits (63), Expect = 9.9
Identities = 22/104 (21%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Frame = -3
Query: 424 IHF*IFVCWYIHLHLKLEITYQRNLYCITHINDGT*NV*IHRNKIMILHHYILCP**LTI 245
IH IF+C ++H ++ + ++Y HI + + + +H Y+ C + +
Sbjct: 121 IHICIFICTHMHTYMCI------HMYTCIHICVFMCTMHAYVYSYVHMHAYV-C---VHM 170
Query: 244 YFVISTILH-VNAKNMLINLYVCNTKNIVKYIILYVKAFKDVYL 116
Y + +H +M I++Y C + I Y +Y+ + +Y+
Sbjct: 171 YTCVHMCIHKYTCMHMCIHMYTCIHRCIFIYTYVYICVYIHIYI 214
>AK129846-1|BAC85241.1| 236|Homo sapiens protein ( Homo sapiens
cDNA FLJ26336 fis, clone HRT02842. ).
Length = 236
Score = 29.5 bits (63), Expect = 9.9
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +2
Query: 86 YSRTTLLI*SQIHVFKCLYIQNYIFYYIFGVTHV*VYQHI---FCIHM*NRRYHKIYS*L 256
YS T + I I VF C + Y++ Y+ H+ ++ + CI + +++
Sbjct: 94 YSYTRICI--HICVFICTHAYIYVYSYV-QCMHMCIHMYTCMHMCIFICTHACICVFTST 150
Query: 257 SWT*YIMM*DHNLISMNLNVLCSIIYMCYAI*VSLISYLKL*MQMYIPTHKYLKMYTLL 433
+ H IS+ C+ +Y+C I + + Y+ + + ++I + Y+ MYT +
Sbjct: 151 HACICVFTCTHVYISV---FTCTHVYICVFIYICIHVYIHIYICIHICVYSYIHMYTYI 206
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,976,719
Number of Sequences: 237096
Number of extensions: 1674308
Number of successful extensions: 2769
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2734
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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