Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0696.Seq
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81050-10|CAB02860.1|  329|Caenorhabditis elegans Hypothetical p...    40   0.001
U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81124-3|CAB03373.1|  341|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z37139-3|CAA85492.2|  793|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF016446-4|AAC24164.1|  321|Caenorhabditis elegans Serpentine re...    27   8.1  

>Z81050-10|CAB02860.1|  329|Caenorhabditis elegans Hypothetical
           protein C50B6.12 protein.
          Length = 329

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +3

Query: 93  GQRY*FNHRYTS--LNAFTYKIIYFTIFLVLHTYKFINIFFAFTCKIVDITKYIVNYHGH 266
           GQ   F   +T+  +N+F   +  F I  +   YK++ ++FAF C I D+T++I   H H
Sbjct: 5   GQLIVFTGLFTAFFVNSFLIYLTLFYITCIRGIYKYMIVWFAFGCIIFDLTEFISRPHIH 64

Query: 267 N 269
           N
Sbjct: 65  N 65


>U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical
           protein F53B1.2 protein.
          Length = 483

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +3

Query: 120 YTSLNAFTYKIIYFTIFLVL--HTYKFINIFFAF 215
           +T L+ FT+ +  F IFL+L  H +  I++F AF
Sbjct: 349 WTGLHTFTWVLNCFAIFLILAAHEHYSIDVFIAF 382


>Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical
           protein F20E11.1 protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 180 HTYKFINIFFAFTCKIVDITKYIVNYHGHN 269
           H Y F+     FT K + I  YI+  HG N
Sbjct: 230 HNYIFLQTMVVFTLKSIHILIYIMTSHGGN 259


>Z81124-3|CAB03373.1|  341|Caenorhabditis elegans Hypothetical
           protein T21B4.5 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 497 LDKASFISKSMAKKYLQHYLGIAKYTFLDICVLV 396
           +DK+SF S    K   + ++GI   TFL I ++V
Sbjct: 238 IDKSSFASPETQKAQARSFIGIVLQTFLPILLVV 271


>AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical
           protein Y68A4A.2 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 180 HTYKFINIFFAFTCKIVDITKYIVNYHGHN 269
           H Y F+     FT K + I  Y+V  HG N
Sbjct: 228 HNYIFLQTMVVFTLKSIHILIYMVTSHGGN 257


>Z37139-3|CAA85492.2|  793|Caenorhabditis elegans Hypothetical
           protein C14B1.6 protein.
          Length = 793

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 517 KVQXNLHSIKRALSANLWQRNTY 449
           ++  N H    A +ANLW+RN Y
Sbjct: 379 RIGTNFHRFTNAENANLWRRNLY 401


>AF016446-4|AAC24164.1|  321|Caenorhabditis elegans Serpentine
           receptor, class h protein23 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 87  TVGQRY*FNHRYTSLNAFTYKIIYFTIFLVLHTYKFINIFFAF 215
           +V + + F ++ + LN  TY+  YF  F V  T + I+IF  F
Sbjct: 107 SVSEMFYFRYKASILNYKTYRFTYFIKFTVYFT-RCISIFDTF 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,382,277
Number of Sequences: 27780
Number of extensions: 284919
Number of successful extensions: 665
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)