Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0696.Seq
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   1.8  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   5.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   7.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   7.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   7.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.6  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = +3

Query: 75  SVHNTVGQRY*FNHRYTSLNAFTYKIIYFTIFLV 176
           ++HN    +Y +N++Y   N    K +Y+  +++
Sbjct: 89  TIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYII 122


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 477 QQIYGKEIPTTLFGNSKVYIFRY 409
           Q+ +GK  P+T F     +IF Y
Sbjct: 4   QKYFGKNFPSTSFILINYFIFLY 26


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 537 LFLGQLGDKVTPCIKRHR 590
           LF G +GD    C   HR
Sbjct: 317 LFFGLVGDSALGCWNEHR 334


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 537 LFLGQLGDKVTPCIKRHR 590
           LF G +GD    C   HR
Sbjct: 317 LFFGLVGDSALGCWNEHR 334


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 537 LFLGQLGDKVTPCIKRHR 590
           LF G +GD    C   HR
Sbjct: 317 LFFGLVGDSALGCWNEHR 334


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 537 LFLGQLGDKVTPCIKRHR 590
           LFLG +G+    C+  H+
Sbjct: 320 LFLGLVGNSGIACVNEHQ 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,808
Number of Sequences: 438
Number of extensions: 3831
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)