Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0696.Seq
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48760.1 68416.m05325 zinc finger (DHHC type) family protein ...    29   1.9  
At3g31980.1 68416.m04050 hypothetical protein low similarity to ...    28   4.3  
At5g43690.1 68418.m05340 sulfotransferase family protein similar...    27   7.5  
At2g01430.1 68415.m00066 homeobox-leucine zipper protein 17 (HB-...    27   7.5  
At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative (CH...    27   10.0 

>At3g48760.1 68416.m05325 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 476

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = +2

Query: 131 KCLYIQNYIFYYIFGV--THV*VYQHIFC 211
           +C+ ++NY FY++F +  T + +Y H+FC
Sbjct: 193 QCIGLRNYRFYFMFVLCSTLLCIYVHVFC 221


>At3g31980.1 68416.m04050 hypothetical protein low similarity to
           SP|P07271 DNA repair and recombination protein PIF1,
           mitochondrial precursor {Saccharomyces cerevisiae}
          Length = 1099

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 156 YFTIFLVLHTYKFINIFFAFTC--KIVDITKY 245
           Y+ +  +   Y F N+F  FTC  K  +IT+Y
Sbjct: 191 YYDVMAITKMYGFPNLFITFTCNPKWPEITRY 222


>At5g43690.1 68418.m05340 sulfotransferase family protein similar to
           steroid sulfotransferase 3 [Brassica napus] GI:3420008,
           steroid sulfotransferase 1 [Brassica napus] GI:3420004;
           contains Pfam profile PF00685: Sulfotransferase domain
          Length = 331

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 403 CWYIHLHLKLEITYQRN 353
           CWY H  L+  I YQRN
Sbjct: 43  CWYYHNTLQAVINYQRN 59


>At2g01430.1 68415.m00066 homeobox-leucine zipper protein 17 (HB-17)
           / HD-ZIP transcription factor 17 identical to
           (GI:18857716) homeodomain-leucine zipper protein ATHB-17
           (GI:18857716) [Arabidopsis thaliana]
          Length = 275

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 327 SFICVMQYKFR**VISSFRCKCIYQHTNI*KCILCYSQIML*VFL 461
           ++IC   YK        + C C+Y++  I    +C   I L VFL
Sbjct: 7   TYICTYTYKLYALYHMDYACVCMYKYKGIVTLQVCLFYIKLRVFL 51


>At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative
           (CHX20) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 842

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 241 FVISTILHVNAKNMLINLYVCNTKNIVKYIILYVKAFKDV 122
           FV++ ++ V A+  L   ++ NTK +V+ I+L +   K V
Sbjct: 367 FVVAVMVKVPAREALTLGFLMNTKGLVELIVLNIGKEKKV 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,027,711
Number of Sequences: 28952
Number of extensions: 236999
Number of successful extensions: 375
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)