Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0695.Seq
(598 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcript... 31 0.021
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript... 29 0.11
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript... 29 0.15
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra... 27 0.46
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein. 27 0.61
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript... 27 0.61
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p... 25 1.4
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript... 25 1.4
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript... 25 1.9
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ... 25 2.5
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript... 25 2.5
M93689-2|AAA29367.1| 975|Anopheles gambiae protein ( Anopheles ... 24 3.2
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos... 24 4.3
AJ441131-1|CAD29630.1| 567|Anopheles gambiae putative chitin bi... 24 4.3
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein. 24 4.3
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript... 23 5.7
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein. 23 7.5
AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcript... 23 7.5
>AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcriptase
protein.
Length = 973
Score = 31.5 bits (68), Expect = 0.021
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Frame = -3
Query: 263 QRVSVVVGLPQGSFLSPYLFILIMYALTTDIQEEAPWCMLFANEIVL--VGEERPEA*MR 90
+++S+ G+PQGS L P L+ ++ + T P + FA++I L +GE E +
Sbjct: 593 KKMSLTAGVPQGSILGPTLWNVMYNGVLTLGLPPGPEVIGFADDIALTVLGESIEEIELL 652
Query: 89 LAK*KERLEN----VGMKISRTKTEHM 21
+ R+E+ + ++I+ KTE +
Sbjct: 653 TSDSVSRIESWMQQMRLEIAHKKTEFL 679
>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 29.1 bits (62), Expect = 0.11
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -3
Query: 242 GLPQGSFLSPYLFILIMYALTTDIQ-EEAPWCMLFANEIVLV 120
G+PQGS L P L+ +MY D+Q E + FA++++L+
Sbjct: 645 GVPQGSILGPTLW-NVMYDSVLDVQLPEGAEIIAFADDLLLL 685
>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
protein.
Length = 1009
Score = 28.7 bits (61), Expect = 0.15
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -3
Query: 257 VSVVVGLPQGSFLSPYLFILIMYALTTDIQEEAPWCMLFANEIVLVGE 114
++V G+PQGS L P L+ L+ + E + +A++IVL+ E
Sbjct: 599 IAVTSGVPQGSVLGPTLWNLMYDGVLRVAMVEGARIIGYADDIVLLVE 646
>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
transcriptase protein.
Length = 1049
Score = 27.1 bits (57), Expect = 0.46
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -3
Query: 242 GLPQGSFLSPYLFILIMYALTTDIQEEAPWCMLFANE 132
G+PQGS + P LFIL + +T + ++ LFA++
Sbjct: 742 GVPQGSNIGPLLFILFINDVTLALPPDS--ISLFADD 776
>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
Length = 1212
Score = 26.6 bits (56), Expect = 0.61
Identities = 11/40 (27%), Positives = 26/40 (65%)
Frame = -1
Query: 427 FMHMVFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRA 308
F+ +V +D++ AF+ + + ++++GVP QR++R+
Sbjct: 630 FLLVVSMDVKNAFNTASWQAIATALQMKGVPAGLQRIVRS 669
Score = 25.0 bits (52), Expect = 1.9
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 254 SVVVGLPQGSFLSPYLFILIMYALTTDIQEEAPWCML-FANEIVLV 120
S+ G+PQGS L P L+ MY D+ M+ +A+++VL+
Sbjct: 688 SITAGVPQGSILGPTLW-NTMYDGVLDVALPQDCEMVAYADDLVLL 732
>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
protein.
Length = 1022
Score = 26.6 bits (56), Expect = 0.61
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -3
Query: 251 VVVGLPQGSFLSPYLFILIMYALTTDIQEEAPWCMLFANEIVLV 120
V G+PQGS L P L+ L+ + + + FA++IVLV
Sbjct: 606 VTAGVPQGSVLGPTLWNLMYNEVLGLTLYDGASLIGFADDIVLV 649
>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
protein.
Length = 3325
Score = 25.4 bits (53), Expect = 1.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 343 GVPGKYQRLIRATHGRTSTYVCSAGDT 263
G PG Q+ + R+ST +C++ DT
Sbjct: 3009 GFPGSLQQQQQQQDARSSTGICTSSDT 3035
>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
protein.
Length = 1222
Score = 25.4 bits (53), Expect = 1.4
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -3
Query: 251 VVVGLPQGSFLSPYLFILIMY--ALTTDIQEEAPWCMLFANEIVLV 120
V G+PQGS L P L+ IMY L ++ E A + +A++IV++
Sbjct: 628 VTAGVPQGSILGPTLW-NIMYDGVLRVELPEGAS-VIGYADDIVVM 671
>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
protein.
Length = 1099
Score = 25.0 bits (52), Expect = 1.9
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 254 SVVVGLPQGSFLSPYLFILIMYALTTDIQEEAPWCML-FANEIVLV 120
SV G+PQGS L P L+ MY DI +L +A+++VL+
Sbjct: 621 SVTAGVPQGSILGPTLW-NTMYDGVLDIALPPDAEILGYADDLVLL 665
>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
gambiae RT2 retroposon. ).
Length = 1222
Score = 24.6 bits (51), Expect = 2.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 251 VVVGLPQGSFLSPYLFILIMYALTTDI 171
V G+PQGS L P L+ IMY D+
Sbjct: 682 VTAGVPQGSILGPTLW-NIMYDGVLDV 707
Score = 24.2 bits (50), Expect = 3.2
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = -1
Query: 427 FMHMVFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRA 308
F+ +V +D++ AF+ + + ++ +GVP QR++R+
Sbjct: 623 FLLVVALDVKNAFNTANWQSIASRLQAKGVPVGLQRMLRS 662
>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 24.6 bits (51), Expect = 2.5
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = -3
Query: 251 VVVGLPQGSFLSPYLFILIMY--ALTTDIQEEAPWCMLFANEIVLVGEER-PE 102
V G+PQGS L P L+ +MY L + +EA + +A+++V++ R PE
Sbjct: 641 VSAGVPQGSILGPTLW-NVMYDGVLRIPLPDEAK-VIGYADDLVVLAPGRTPE 691
>M93689-2|AAA29367.1| 975|Anopheles gambiae protein ( Anopheles
gambiae T1 retroposon. ).
Length = 975
Score = 24.2 bits (50), Expect = 3.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 242 GLPQGSFLSPYLFILIM 192
G+PQG LSP LF L +
Sbjct: 671 GVPQGCVLSPLLFSLFI 687
>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
polyprotein protein.
Length = 1726
Score = 23.8 bits (49), Expect = 4.3
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -1
Query: 538 MRQL*GNKAHSHSTKAWEKVIASRMREESEVSQNQFGFMHMVFV 407
M+++ K + + W++ I +MR+E EV + Q + V V
Sbjct: 989 MQRVWSLKKENGDSYGWDEEIPQQMRQEWEVFERQLTHLQEVQV 1032
>AJ441131-1|CAD29630.1| 567|Anopheles gambiae putative chitin
binding protein protein.
Length = 567
Score = 23.8 bits (49), Expect = 4.3
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = +2
Query: 74 LSILPVSSMPQAFPLQREQFR*QTAYTKAPLPVCPLLEHTLLG*TGK-GLKMIPGVSLPP 250
+ +LP S MP ++P P P P+ + T + M+P LPP
Sbjct: 39 IGVLPASKMPTSYP--------SLPAPIVPSPGAPIQQSRPQAVTVRSSAPMLPKGGLPP 90
Query: 251 H*LVGIASGAYVRTGSTV--RSSNKPL-VFPWHP 343
+ AS Y+ S++ ++++ PL V P+ P
Sbjct: 91 KGVPSSASPVYMSPASSLMTKATSLPLGVPPFRP 124
>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
Length = 1459
Score = 23.8 bits (49), Expect = 4.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 243 YHHTNSLVSPAEHTYVLVLPC 305
+ +TN V PAEHT L + C
Sbjct: 78 FDNTNFSVIPAEHTAALSILC 98
>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
protein.
Length = 1209
Score = 23.4 bits (48), Expect = 5.7
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -1
Query: 424 MHMVFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRATHGRTST 287
+ M ++D +KA+D V L +++ V G +L++ G ST
Sbjct: 600 LDMAYIDYKKAYDSVPHSYLLKVLQLYKVDGNVIKLMQHAMGMWST 645
>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
Length = 1187
Score = 23.0 bits (47), Expect = 7.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 61 FSNLSFYFASLIYASGLSSPTRTISLANSIHQGASSCMS 177
F+N + F + + G+S TRT+++AN I + A+ S
Sbjct: 1148 FNNANVLFRTK-FIDGMSGVTRTVNVAN-IKRAAADAAS 1184
>AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcriptase
protein.
Length = 988
Score = 23.0 bits (47), Expect = 7.5
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Frame = -3
Query: 254 SVVVGLPQGSFLSPYLFILIMY--ALTTDIQEEAPWCMLFANEI--VLVGEERPE----A 99
+V G+PQGS L P L+ +MY L ++ + FA+++ +G + A
Sbjct: 616 TVSAGVPQGSVLGPTLW-NVMYDDLLRLPLEGLRADIIGFADDVAFTFLGRTTEQVSALA 674
Query: 98 *MRLAK*KERLENVGMKISRTKTEHM-FC 15
L + + L VG++++ KT M FC
Sbjct: 675 TANLERIERWLRGVGLELAHQKTGFMIFC 703
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,976
Number of Sequences: 2352
Number of extensions: 14019
Number of successful extensions: 49
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57609459
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -