Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0695.Seq
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containi... 31 0.44
At5g27970.1 68418.m03369 expressed protein 31 0.77
At5g38670.1 68418.m04676 F-box family protein similar to SKP1 in... 29 3.1
At5g05840.1 68418.m00642 expressed protein contains Pfam profile... 29 3.1
At4g26640.2 68417.m03839 WRKY family transcription factor contai... 28 4.1
At4g26640.1 68417.m03838 WRKY family transcription factor contai... 28 4.1
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 28 4.1
At3g17460.1 68416.m02229 PHD finger family protein contains Pfam... 28 4.1
At3g17840.1 68416.m02274 leucine-rich repeat transmembrane prote... 27 7.2
At3g10510.1 68416.m01261 kelch repeat-containing F-box family pr... 27 9.5
>At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 638
Score = 31.5 bits (68), Expect = 0.44
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -2
Query: 564 LRPKVDIQVCDNYRVIKLIHIVRKLGRK**RAE*--EKRVKYHRISSGSCTWCLLIW 400
L P+ I++ N RV H V KL K E RV++H GSC+ CL W
Sbjct: 583 LPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCS-CLDYW 638
>At5g27970.1 68418.m03369 expressed protein
Length = 1629
Score = 30.7 bits (66), Expect = 0.77
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 243 YHHTNSLVSPAEHTYVLVLPCVARISRWYFP 335
+H NS + T+VLVL +AR+ R YFP
Sbjct: 1063 HHSRNSAQKQWDETFVLVLGGIARLFRSYFP 1093
>At5g38670.1 68418.m04676 F-box family protein similar to SKP1
interacting partner 6 [Arabidopsis thaliana]
GI:10716957; contains Pfam profile PF00646: F-box domain
Length = 291
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 291 LVLPCVARISRWYFPGTPL 347
L+L CVAR+SR Y+P L
Sbjct: 15 LILSCVARVSRLYYPALSL 33
>At5g05840.1 68418.m00642 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620);
expression supported by MPSS
Length = 439
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 266 IASGAYVRTGSTVRSSNKPLVFPWHPSHFHVSPQNLTENPIKRFFQ 403
+ SG + GS + + + PWHPSH P P++RF Q
Sbjct: 190 VVSGCKISAGSDAKVAWRQT--PWHPSHASRGP----PRPLRRFLQ 229
>At4g26640.2 68417.m03839 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 557
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2
Query: 237 TPGIIFKPLPVHPNNVCSNNGHTGRG 160
T G +FKP PVH + S++ +TGRG
Sbjct: 82 TTGSLFKPRPVHIS--ASSSSYTGRG 105
>At4g26640.1 68417.m03838 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 485
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2
Query: 237 TPGIIFKPLPVHPNNVCSNNGHTGRG 160
T G +FKP PVH + S++ +TGRG
Sbjct: 10 TTGSLFKPRPVHIS--ASSSSYTGRG 33
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 352 SCFTTEPYGKPNQTLFPNQQTPC 420
S T+ YG N T FP+ Q PC
Sbjct: 145 STTTSNSYGNGNDTKFPDHQCPC 167
>At3g17460.1 68416.m02229 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 198
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 319 AAGISLAPLSLSCFTTEPYGKPNQTLFPNQQ 411
A+ S AP S FT +P PN T FP +
Sbjct: 87 ASSSSSAPPPASSFTCQPCSNPNFTFFPKSR 117
>At3g17840.1 68416.m02274 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor kinase GB:AAA33715
from [Petunia integrifolia]
Length = 647
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 37 VRLIFIPTFSNLSFYFASLIYASGLSS 117
+RL F P+ SNLS +F+ L+ + L S
Sbjct: 1 MRLFFTPSMSNLSIFFSILLLSLPLPS 27
>At3g10510.1 68416.m01261 kelch repeat-containing F-box family
protein similar to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 371
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 246 HHTNSLVSPAEH-TYVLVLPCVARISRWY 329
+ T SL+ E YVL+ C+ ++RWY
Sbjct: 56 YKTRSLLGCTEDCVYVLIEDCILEVARWY 84
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,552,648
Number of Sequences: 28952
Number of extensions: 294457
Number of successful extensions: 702
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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