Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0694.Seq
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 29 0.44
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 1.3
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 27 1.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 1.8
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 2.3
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 2.3
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 26 3.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.1
SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51... 26 3.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 3.1
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 3.1
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.1
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 26 4.1
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 25 5.4
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 25 7.2
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 25 7.2
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 9.5
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 29.1 bits (62), Expect = 0.44
Identities = 22/58 (37%), Positives = 30/58 (51%)
Frame = -2
Query: 474 ALPVSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGV 301
A PV+ P AP PAAP+ P+A P Q ++P A+ V + PP+ V P V
Sbjct: 534 AAPVAPEVP--SAPQRPAAPVVPEA-PSVPQRPAVPVVPEALSVPQ--PPVAPVAPEV 586
Score = 26.6 bits (56), Expect = 2.3
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Frame = -2
Query: 483 VTKALPVSHPQPIRRAPTVPAAPIPPQA-----RPGQAQPLQAVLLPRAVQV 343
V +AL V P AP VP+ P PP A P QP A + P V
Sbjct: 568 VPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSV 619
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = -2
Query: 486 PVTKALPVSHPQPI---RRAPTVPAAPIPPQA-RPGQAQPLQAV 367
P+ + P++ P P P PAAP PP A P A P+ ++
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASI 491
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQP 379
P P+ + V P PP A PG++ P
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAP 401
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -2
Query: 504 IEGIQDPVTKALPVSHPQPIRRAPTVPAAP 415
IEG D V K LP P +AP P AP
Sbjct: 367 IEGDDDEVAKVLPKPPSVPTIQAPIPPEAP 396
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 1.8
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Frame = -2
Query: 522 NRFWCGIEGIQDPVTKALPVSHPQPIRRAPTVPA------APIPPQARPGQAQP 379
N+ G E + PV P+ P P PA AP PP RP P
Sbjct: 877 NQIMSGGEALAAPVAVPAPIPAPVAEPAPPAAPAKEVVEKAPSPPATRPKSTTP 930
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 492 QDPVTKALPVSHPQPIRRAPTVPAAPIPP 406
QD + A P+ P R A +VP P PP
Sbjct: 153 QDKMASATPIYKPNQRRIAASVPDKPPPP 181
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 2.3
Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Frame = -2
Query: 465 VSHP---QPIRRAPTVPAA------PIPPQARPGQAQP---LQAVLLPRAVQVHRTLPPL 322
V+HP QPI AP VPA PIPPQA P P V LP A + P+
Sbjct: 229 VNHPMAGQPIAIAP-VPAPNQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQPV 287
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 201 YRCLIQLNTTWSIPCSV*DFKSYLMTSNDFNDNF 100
+RC T SIPC++ + ND+N NF
Sbjct: 85 FRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 3.1
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Frame = -2
Query: 486 PVTKALP---VSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLL-PRAVQVHRTLPPL 322
P T A P + P P P AP P + P AQP V P A + +PP+
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPM 197
>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
L51|Schizosaccharomyces pombe|chr 2|||Manual
Length = 145
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 434 RQCQQHRFHLKHVRGKHNHFRQFFYLGRFKYI 339
++ Q FH+ + +GKH R ++ GR K I
Sbjct: 53 KESQDVEFHVTNRQGKHPLIRAYYNTGREKVI 84
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 3.1
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -2
Query: 507 GIEGIQDPVTKALPVSHPQPIRRAPTVP--AAPIPPQARPGQAQPL 376
G + P A PV P P P VP AA +PP P +A P+
Sbjct: 1157 GAPPVPKPSVAAPPV--PAPSSGIPPVPKPAAGVPPVPPPSEAPPV 1200
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -2
Query: 276 YTSLVKENMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV*DFKSY 133
Y+S+ ++P + ++ Y+ P Y C I N+ +P S DF ++
Sbjct: 441 YSSIYSNDVPAIPPNVPYTFVDPYTYACYINNNS--YLPPSYMDFYTW 486
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 4.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 453 QPIRRAPTVPAAPIPPQARPGQ 388
+P+ R P +P P+P + PG+
Sbjct: 101 EPLPREPPLPNEPVPEEPLPGE 122
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 462 SHPQPIRRAPTVPAAPIPPQARPGQA 385
S+P ++R P +PA P+ P RP A
Sbjct: 221 SYPYELQRKPLIPAHPV-PSFRPTSA 245
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 313 VSRSHHSGVNRLLHKPGQGKYAFASKTYSIFL 218
V + H G+N L PG A ASK I L
Sbjct: 333 VLKYHSDGINSLAFHPGSNVIALASKDTRISL 364
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 7.2
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -2
Query: 450 PIRRAPTV-PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 316
P RR V PAAP+P A P + P A P+ + P L L
Sbjct: 316 PKRRPIEVKPAAPVPTPAPPVKTSPHPASYRPQPTRNVEVRPLLML 361
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -2
Query: 306 GVIIQA*TDFYTSLVKENMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCS 154
G+ Q ++FY + +N+ ++ + LP+ R LIQ+ T+ IP S
Sbjct: 160 GIQAQTLSNFYMAF-SQNLVIIPVLNKVDLPTADVDRTLIQVQQTFDIPMS 209
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -2
Query: 486 PVTKALPVSHPQPIRRAPTVPAAP-IPPQARP 394
P ALP P P P VPA P IP P
Sbjct: 526 PPGMALPPGMPAPFPGYPAVPAMPGIPGATAP 557
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,464
Number of Sequences: 5004
Number of extensions: 42828
Number of successful extensions: 142
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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