Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0694.Seq
(538 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 32 0.34
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45
SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5) 31 0.79
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 31 0.79
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 31 0.79
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 29 1.8
SB_9848| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 2.4
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_4272| Best HMM Match : RVT_1 (HMM E-Value=2e-28) 28 4.2
SB_2104| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 28 5.6
SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53) 27 7.3
SB_11994| Best HMM Match : ERM (HMM E-Value=0.28) 27 7.3
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 27 7.3
SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61) 27 7.3
SB_54886| Best HMM Match : SH3_2 (HMM E-Value=3.2e-24) 27 7.3
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38) 27 7.3
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 27 7.3
SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9) 24 8.1
SB_45852| Best HMM Match : I-set (HMM E-Value=0) 27 9.7
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74) 27 9.7
SB_6424| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_39018| Best HMM Match : Crystallin (HMM E-Value=8.5) 27 9.7
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 31.9 bits (69), Expect = 0.34
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = -2
Query: 498 GIQDPVTKALPVSHPQPIRRAPTVP----AAPIPPQARPGQAQP 379
GIQ P + + P P R AP P +AP PP AR G A P
Sbjct: 284 GIQPPPPPSRGAAPPPPSRGAPPPPPSRGSAPPPPPARMGTAPP 327
>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 31.5 bits (68), Expect = 0.45
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -2
Query: 426 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVI 298
PA P +RP A P LP+ V R LP L VFPG++
Sbjct: 313 PATAPPSISRPATAPPPVFRGLPQLPPVFRCLPQLPPVFPGLL 355
>SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5)
Length = 130
Score = 30.7 bits (66), Expect = 0.79
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = -2
Query: 495 IQDPVT-KALPVSHPQPIRR----APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTL 331
I P+T + + HP P+RR P+ A+ IPP RP ++P++ P + H +L
Sbjct: 14 ITRPLTYRPMRGEHP-PVRRDHDSLPSENASTIPPITRPLTSRPIRG-QHPPVRRAHDSL 71
Query: 330 PPLRLVFP 307
P RL +P
Sbjct: 72 PSERLDYP 79
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 30.7 bits (66), Expect = 0.79
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -2
Query: 486 PVTKALPVSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
P T +P + P +P +P AP+ P P P +A+ P LPP
Sbjct: 203 PPTPPMPETPLPP--GSPHIPPAPLHPHIPPAPPNPSKAIATPNPPMPETPLPP 254
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 30.7 bits (66), Expect = 0.79
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Frame = -2
Query: 489 DPVTKALPVSHPQPIRRAPTVPAAPIPPQARPGQ----AQPLQAVLLPRAVQVHRTLPPL 322
+P ++PVS+P P VP P+PP A PG QP+Q LP + +PP
Sbjct: 36 NPPPSSVPVSYPGPPPAMYAVPGMPMPP-AYPGMPTYPPQPMQ--FLPGTLP---GMPPP 89
Query: 321 RLVFPGVIIQA*TDFYTSLVKENMPLLRKHIRYSLPSP 208
+ + QA T F V PL+ + + + SP
Sbjct: 90 PMFAQMMAPQAMT-FQPMPVSATAPLVTQGLTQATSSP 126
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 486 PVTKALPVSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
P + P P P P+ P P+ P+ RP +QP
Sbjct: 45 PPLREPPTPAPTPPPALPSTPTLPLAPRPRPTASQP 80
>SB_9848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 486 PVTKALPVSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
P+++ LPV P PI P++ IPP P A P
Sbjct: 370 PMSEYLPVDEPAPISELPSI--REIPPIQEPTHATP 403
>SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -2
Query: 477 KALPVSHPQP--IRRAPTVPAAPIPPQARPGQAQP 379
KA PV+ P+P + P PAAP PP P A P
Sbjct: 209 KATPVNPPEPDYLEPTPPPPAAPAPPPP-PAAAPP 242
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -2
Query: 432 TVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPP 325
T+P+ P+PP+A G++QP L P+A+++ PP
Sbjct: 1007 TLPSTPLPPKALKVLGESQPSTQRLPPKALKLLGESPP 1044
>SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -2
Query: 522 NRFWCGIEGIQDPVTKA-LPVSHPQ-PIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 358
++ GI I D +TKA + P P +APT + P P A P+Q V P
Sbjct: 154 SKLTAGIHRIADSITKAGKNMMRPSSPNSQAPTTTSPTSPTPLLPPSAPPIQPVACP 210
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Frame = -2
Query: 507 GIEGIQDP--VTKALPVSHPQPIRRAPTVPA----APIPPQARPGQAQPLQAVLLP 358
G GI P VT P + P P + P PA AP+PP P P A L P
Sbjct: 733 GEAGIPSPSEVTTKSPPAPPLPPKVTPKPPAPPQFAPVPPPCAPIPPMPCSAPLPP 788
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 29.1 bits (62), Expect = 2.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 516 FWCGIEGIQDPVTKALPVSH 457
+WC I+G+ DP PV H
Sbjct: 3361 YWCNIKGLADPSISPCPVGH 3380
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 28.7 bits (61), Expect = 3.2
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = -2
Query: 486 PVTKALPVS-HPQPIRRAPTVP--AAPIPPQARPG--QAQPLQAVLLPRAVQVHRTLPPL 322
P KA P S P P R P+ P A PIPP +P ++P P + +PP
Sbjct: 1029 PKRKASPPSAQPLPPPRKPSPPPSAVPIPPPRKPSPPPSEPAPPPRQPPPPSTSQPVPPP 1088
Query: 321 R 319
R
Sbjct: 1089 R 1089
>SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 392
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 292 GVNRLLHKPGQGKYAFASKTYSIFLTISVRISVFNTTKHDLEYSL 158
G + L G YA+ +++ FLT VFN+T DL+ L
Sbjct: 191 GQDYLKGMAGAANYAWVNRSSMTFLTRQAFAKVFNSTPDDLDMHL 235
>SB_4272| Best HMM Match : RVT_1 (HMM E-Value=2e-28)
Length = 876
Score = 28.3 bits (60), Expect = 4.2
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = -2
Query: 492 QDPVTKALPVSHPQPIRRAPTVPAA-----PIPPQARPGQAQPLQAVLLPRAVQVHRTLP 328
++ V ++LP+ HPQP+ + P PP+ P QP + R+ ++ T P
Sbjct: 815 EELVRESLPMQHPQPVSVELDTGSTDENHLPTPPEVNPEVTQP--PLRTTRSGRI--TKP 870
Query: 327 PLRL 316
P+RL
Sbjct: 871 PVRL 874
>SB_2104| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1219
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -2
Query: 492 QDPVTKALPVSHPQPIRRAPTVPAA-----PIPPQARPGQAQP 379
++ V ++LP+ HPQP+ + P PP+ P AQP
Sbjct: 744 EELVRESLPMQHPQPVSVELDTGSTDENHLPTPPEVNPEVAQP 786
>SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 28.3 bits (60), Expect = 4.2
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -2
Query: 426 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVIIQA*TDFYTSLVKENMP 247
P PIP QA PGQA P + P VQ + + P FPG + ++ T
Sbjct: 5 PMKPIPGQALPGQAIP--GMQGPYQVQPPQGVSPGMPGFPGANVSLGSNMPTMPAGTTTV 62
Query: 246 LLRKHIRYSLP 214
++ +R +P
Sbjct: 63 NFQQQVRPQVP 73
>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 294 QA*TDFYTSLVKENMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 151
Q+ +Y VKE + H+ + P RC I+LN WS PC V
Sbjct: 738 QSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Frame = -2
Query: 468 PVSHPQPIRRAP-TVPAAPIPPQARPGQAQPLQA-----VLLPRAVQVHRTLPPLRLVFP 307
P + +P ++ P VP + PQA PG P+ A + P A+ + P ++F
Sbjct: 112 PENAARPAKKVPIAVPVMGVIPQAMPGMVPPVMAPAGAPIAAPMAIPTQQPDLPNNILFL 171
Query: 306 GVIIQA*TDFYTSLVKENMP 247
+ T+ S++ P
Sbjct: 172 TNLPMETTELMLSMLFNQFP 191
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 27.9 bits (59), Expect = 5.6
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = -2
Query: 486 PVTKALPVSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 307
P A P +P P PP A+P A P AV PR T PP V
Sbjct: 715 PAAAAAPQGYPPSSAPTGYQARGPAPPGAKPRVAAPYGAV--PRPGAPAATAPPGAPVGR 772
Query: 306 GVI 298
G++
Sbjct: 773 GIL 775
>SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53)
Length = 264
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 477 KALPVSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
K++ + P P+ P P P PP PG +P
Sbjct: 66 KSMAAATPPPLCAPPPPPPPPPPPPPPPGAKKP 98
>SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)
Length = 465
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 477 KALPVSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
K++ + P P+ P P P PP PG +P
Sbjct: 267 KSMAAATPPPLCAPPPPPPPPPPPPPPPGAKKP 299
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 441 RAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
R TVP P+PP P Q+ P +L+P + LPP
Sbjct: 629 RPTTVP--PLPPTPPPRQSTPPPLLLIPLLPLLTLPLPP 665
>SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61)
Length = 314
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -2
Query: 495 IQDPVTKALPVSHPQPIRRA-PTVP-AAPIPPQARPGQAQPLQAVLLP 358
++ P+ P P R + P VP A+P PP ARP P + + P
Sbjct: 33 MEPPIDVQFTSPQPMPGRNSSPIVPRASPQPPTARPYGTSPGTSAMSP 80
>SB_54886| Best HMM Match : SH3_2 (HMM E-Value=3.2e-24)
Length = 440
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -2
Query: 471 LPVSH-PQPIRRAPTVPAAPI-PPQARPGQAQPLQA-VLLPRAVQVHRTLPPL 322
+P+S QP+R A T P PI P +A L A +L T PPL
Sbjct: 50 VPISQVTQPVRAAATAPVRPIFTAHMSPAEADKLSAPILNGNHTVTSATSPPL 102
>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
Length = 2084
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -2
Query: 471 LPVSH-PQPIRRAPTVPAAPI-PPQARPGQAQPLQA-VLLPRAVQVHRTLPPL 322
+P+S QP+R A T P PI P +A L A +L T PPL
Sbjct: 1597 VPISQVTQPVRAAATAPVRPIFTAHMSPAEADKLSAPILNGNHTVTSATSPPL 1649
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 27.5 bits (58), Expect = 7.3
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = -2
Query: 486 PVTKALPVSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVL--LPRAVQVHRTLPPLRLV 313
P + P P P +P+ P P PP P +PL A L P + TLPP L
Sbjct: 207 PPPRPPPSPPPPPPPPSPSPPRPPPPPP--PSPPRPLAAKLPEPPPIPNMPPTLPPPTLG 264
Query: 312 F-PGVII--QA*TDFYTSLVKENMP 247
+ P + ++ T+F + EN P
Sbjct: 265 YLPTARLTRESVTEFRDRMYLENYP 289
>SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9)
Length = 706
Score = 23.8 bits (49), Expect(2) = 8.1
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 325 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC 423
W Y N + +C K C+ C WNRCC
Sbjct: 306 WSAEERYNNSCQLGHCKK-ACIG--CPDWNRCC 335
Score = 21.8 bits (44), Expect(2) = 8.1
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = +1
Query: 400 CLRWNRCCW 426
C WN+CC+
Sbjct: 346 CPSWNKCCY 354
>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
Length = 1122
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 437 HRQCQQHRFHLKHVRGKHN-HFRQFFYLGR 351
H Q QQH+FH H +N H+R F + R
Sbjct: 1043 HHQ-QQHQFHHHHHHTHYNYHYRHFLIIDR 1071
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/42 (30%), Positives = 16/42 (38%)
Frame = -2
Query: 483 VTKALPVSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 358
+TKA P + P P + PT P P P Q P
Sbjct: 15 LTKATPQTTPTPTKPTPTTHTPTKPSPTTPTSTAPTQTTPTP 56
>SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)
Length = 483
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -2
Query: 513 WCGIEGIQDPVTKALPVSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRA 352
+C IE + P T P + P P + P P PP P P+ +L+P A
Sbjct: 147 FCCIEE-EKPTTTKKPTTKPTPAPHSSPSPTPPPPPIIPP--CPPVINLLIPTA 197
>SB_6424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -2
Query: 417 PIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 316
P P RPGQAQ L L +HR+L PL L
Sbjct: 40 PGPMARRPGQAQTLGT--LVEDAHMHRSLRPLAL 71
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 483 VTKALPVSHPQPIRRAPTVPAAPIPPQARPGQAQ 382
V LP+ P P P AP+P + RP + +
Sbjct: 134 VCPTLPIKLPPPFNPLPVQGIAPLPIKLRPSEGK 167
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 474 ALPVSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
+LP+S QP+ + P IP Q P QP
Sbjct: 2090 SLPMSAQQPVMQQPINQQVQIPQQGMPVNIQP 2121
>SB_39018| Best HMM Match : Crystallin (HMM E-Value=8.5)
Length = 67
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 334 RPMYLNRPR*KNCLKW-LCLPRTCLRWNRCCWHCRC 438
R Y+ + K L + +CL T LR +R C HC C
Sbjct: 22 RQRYVTHDKRKALLSFTVCLCSTHLRSDRLCVHCPC 57
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = -2
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPL---QAVLLPRAVQVHRTLPPLRLVFP 307
P +P+VP P PP +PG A + + + V+ + P RL P
Sbjct: 2311 PSTGSHSPSVPPPPPPPPEQPGDAMDIEDEEGQPSGSKILVNTPIAPTRLALP 2363
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,794,349
Number of Sequences: 59808
Number of extensions: 325462
Number of successful extensions: 1137
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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