Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0694.Seq
         (538 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calc...    25   1.2  
AJ302657-1|CAC35522.1|  115|Anopheles gambiae gSG6 protein protein.    23   8.6  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   8.6  

>EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calcium
           channel beta subunitprotein.
          Length = 466

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 462 SHPQPIRRAPTVPAAPIPPQ-ARPGQAQP 379
           +HP P+R  P+VP  P+P Q A P   QP
Sbjct: 424 THP-PVRPTPSVP-RPLPSQEASPSGEQP 450


>AJ302657-1|CAC35522.1|  115|Anopheles gambiae gSG6 protein protein.
          Length = 115

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 314 CFQESSFRREQTFTQAWSRKICLCFENIFDIPY 216
           C + ++F+ E+  T   +R  C C E    +PY
Sbjct: 45  CTRVATFKGERFCTLCDTRHFCECKETREPLPY 77


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 413 FHLKHVRGKHNHFRQFFYLGRF 348
           FHL  V   H +FR++ ++  F
Sbjct: 923 FHLSQVLTGHGYFREYLHVCGF 944


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 529,275
Number of Sequences: 2352
Number of extensions: 10900
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 49897362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)