Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0694.Seq
(538 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 32 0.30
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 32 0.30
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 32 0.30
Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical pr... 30 0.92
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 0.92
Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical p... 29 2.1
Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr... 29 2.1
U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein. 29 2.1
AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical ... 29 2.1
AC006666-4|AAK21415.1| 109|Caenorhabditis elegans Hypothetical ... 29 2.1
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 2.8
U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical p... 29 2.8
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 2.8
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 2.8
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 29 2.8
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 29 2.8
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 28 3.7
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 28 3.7
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 28 3.7
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 28 3.7
AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine r... 28 3.7
AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical... 28 3.7
AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical... 28 3.7
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 28 4.9
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 28 4.9
AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical ... 27 6.5
AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 27 6.5
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 27 6.5
Z81040-2|CAB02782.2| 466|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z77133-3|CAB00868.2| 149|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical pr... 27 8.6
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 31.9 bits (69), Expect = 0.30
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = -2
Query: 492 QDPVTKALPVSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLV 313
Q PV +A P +++AP + A PP QAQ QA P A Q+ PP +V
Sbjct: 85 QKPVAQAPPAQAKPTVQQAPIL-VAQAPPNPPAPQAQQHQAPAPPAARQIPVQQPPKPVV 143
Score = 31.5 bits (68), Expect = 0.40
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -2
Query: 492 QDPVTKALPVSHPQPI-RRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 328
Q PV +A P+PI ++AP V AP PP+ + QAQP+Q P V + P
Sbjct: 240 QQPVVQA----PPKPIVQQAPVVQQAP-PPKQQQAQAQPVQQPPNPAPVVQQASAP 290
Score = 30.3 bits (65), Expect = 0.92
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -2
Query: 456 PQP-IRRAPTVPAAPIPPQARPGQAQPLQ 373
P+P +++APT AAP PP+ P QA P+Q
Sbjct: 311 PKPAVQQAPT-RAAPAPPKPAPQQAPPVQ 338
Score = 29.1 bits (62), Expect = 2.1
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Frame = -2
Query: 492 QDPVTKALPVSHP-----QPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 328
Q PV + P + P Q AP A PI Q +P Q Q QA + + V + P
Sbjct: 19 QVPVIQQAPPNSPAQQQQQAQAHAPPAQAKPIVQQTQPAQKQQAQAPPAAQQIPVVQQAP 78
Query: 327 P 325
P
Sbjct: 79 P 79
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = -2
Query: 495 IQDPVTKALPVSHPQP------IRRAPTVPAAPIPPQARPGQAQPL 376
+Q PV + P S PQ +++AP V A P A+P Q QP+
Sbjct: 198 VQAPVAQQAPPSQPQQAQAQPVVQQAPPVQQASPKPVAQPVQQQPV 243
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 492 QDPVTKALPVSHPQPIRRAPTVPAAPIPPQARPGQAQPLQ 373
Q+P A+ + +++AP P PP+ P QA P++
Sbjct: 339 QNPPKPAVQQAQAPVVQQAPAPPVQQAPPKPTPQQAPPVR 378
Score = 27.1 bits (57), Expect = 8.6
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Frame = -2
Query: 468 PVSHPQPIRRAPTVPAAPIPPQARP----GQAQP-LQAVLLPRAVQVHRTLPPLRLVFPG 304
PV P ++AP A P QA+P QAQP +Q + V +T PP + V
Sbjct: 141 PVVQQAPAQQAPKSVAQAPPAQAKPIVQQAQAQPVVQKAPTQQPPVVQQTPPPQQPVVQA 200
Query: 303 VIIQ 292
+ Q
Sbjct: 201 PVAQ 204
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 31.9 bits (69), Expect = 0.30
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 486 PVTKALPVSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 358
P ++ + V P P VP +PPQ RP Q P+Q P
Sbjct: 338 PTSQPVQVMTPPPTLPPVQVPIQTLPPQTRPPQLPPVQITQPP 380
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 31.9 bits (69), Expect = 0.30
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 486 PVTKALPVSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 358
P ++ + V P P VP +PPQ RP Q P+Q P
Sbjct: 435 PTSQPVQVMTPPPTLPPVQVPIQTLPPQTRPPQLPPVQITQPP 477
>Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical
protein C44H9.6 protein.
Length = 610
Score = 30.3 bits (65), Expect = 0.92
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Frame = +1
Query: 325 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC----WHCRCS 441
W+KRP Y R R ++ K LP + + C W C C+
Sbjct: 567 WKKRPYYRRRQRKRSAQKEKSLPESFQAMGKSCAKMVWRCICN 609
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 30.3 bits (65), Expect = 0.92
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -2
Query: 468 PVSHPQPIRRAPTVPAAPIPPQARPGQAQPL 376
P +PQ AP P AP P A P A PL
Sbjct: 54 PAPYPQQAVPAPAPPPAPYPQHAVPAPAPPL 84
Score = 30.3 bits (65), Expect = 0.92
Identities = 20/54 (37%), Positives = 21/54 (38%)
Frame = -2
Query: 486 PVTKALPVSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
PV P +PQ AP P AP P A P A P Q P H PP
Sbjct: 93 PVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPA-PYQQQPPPPPPPPHYPPPP 145
>Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical
protein T06E4.12 protein.
Length = 228
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Frame = -2
Query: 486 PVTKALPVSHPQPIRRAPTVPA-APIPPQA-RPGQAQPL------QAVLLPRAVQVHRTL 331
P P+ P+P+ AP +PA AP P A RP A P ++ PR V +
Sbjct: 135 PAFAPAPILAPRPVLAAPAIPAFAPAPLLAPRPVLAAPAIPAFAPAPIIAPRPVLAAPAI 194
Query: 330 PPLRLVFPGVI 298
P P I
Sbjct: 195 PAFAPAVPAAI 205
>Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical
protein T12G3.1 protein.
Length = 693
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 486 PVTKALPVSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 358
P+ +A PVS P P +PT+ +P A+ + P LP
Sbjct: 280 PMPQAPPVSTPVPFPPSPTIGNGAVPKPAQEPRIPPSPTSALP 322
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 492 QDPVTKALPVSHPQPIRRAPTVPAAPIPPQ--ARPGQAQPLQAVLLPRAVQVHRTLPPL 322
Q P P+ + QP+ P AP+P Q A+P Q P A Q+ RT P+
Sbjct: 593 QQPFFNQQPMFNQQPMYLQPAFNQAPLPYQYPAQPSQFNPFLASFRRFKRQIGRTPYPI 651
>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical
protein R08B4.1a protein.
Length = 1137
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 492 QDPVTKALPVSHPQPIRRAPTVPAAPIPPQ--ARPGQAQPLQAVLLPRAVQVHRTLPPL 322
Q P P+ + QP+ P AP+P Q A+P Q P A Q+ RT P+
Sbjct: 593 QQPFFNQQPMFNQQPMYLQPAFNQAPLPYQYPAQPSQFNPFLASFRRFKRQIGRTPYPI 651
>U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein.
Length = 790
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 492 QDPVTKALPVSHPQPIRRAPTVPAAPIPPQ--ARPGQAQPLQAVLLPRAVQVHRTLPPL 322
Q P P+ + QP+ P AP+P Q A+P Q P A Q+ RT P+
Sbjct: 246 QQPFFNQQPMFNQQPMYLQPAFNQAPLPYQYPAQPSQFNPFLASFRRFKRQIGRTPYPI 304
>AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical
protein F13B6.3 protein.
Length = 432
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 495 IQD-PVTKALPVSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
I+D PVT + P + P+P + T P PP P P
Sbjct: 341 IEDLPVTTSSPATTPKPTAKPTTAPECTCPPTTFPTTRAP 380
>AC006666-4|AAK21415.1| 109|Caenorhabditis elegans Hypothetical
protein H31G24.1 protein.
Length = 109
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = -2
Query: 486 PVTKALP----VSHPQPIRRAPTVPAAPIPPQARPGQAQPLQA 370
PV+ A+P PQP ++P + A P PP P Q P QA
Sbjct: 58 PVSYAIPPPSYAQPPQPYAQSP-IAAVPPPPPPPPPQPAPAQA 99
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -2
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVL-LPRAVQVHRTLPPLRLVFP 307
P+P R+ + AP+ P ARP P A L L A + + P R + P
Sbjct: 725 PKPPRKKKPIAEAPLRPPARPAPIVPTSAGLSLVLAASLPTSSTPSRFLNP 775
>U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical
protein R144.2a protein.
Length = 823
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -2
Query: 486 PVTKALPVSHPQPIRRAPTVPAAPI---PPQARPGQAQP 379
P+ +PV P P+ AP VPA P+ PP P Q P
Sbjct: 317 PIRPMIPV--PPPVSVAPFVPAPPLSSAPPFQHPQQHHP 353
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = -2
Query: 489 DPVTKALPVSHPQPIRRAPTVPAAPIPPQARPGQAQPLQA 370
+ T A P S PQ +AP V AAP P QA P QA
Sbjct: 585 EAATAARPPSTPQA-PQAPPVQAAPAPVQAPQAPQAPPQA 623
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = -2
Query: 489 DPVTKALPVSHPQPIRRAPTVPAAPIPPQARPGQAQPLQA 370
+ T A P S PQ +AP V AAP P QA P QA
Sbjct: 585 EAATAARPPSTPQA-PQAPPVQAAPAPVQAPQAPQAPPQA 623
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 495 IQDPVTKALPVSHPQPIRRAPTVP 424
IQ+P T P+ P P+ AP +P
Sbjct: 293 IQEPTTTPAPLEAPAPVENAPNLP 316
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 495 IQDPVTKALPVSHPQPIRRAPTVP 424
IQ+P T P+ P P+ AP +P
Sbjct: 293 IQEPTTTPAPLEAPAPVENAPNLP 316
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
protein F35A5.1 protein.
Length = 1274
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 492 QDPVTKALPVSHPQPIRRAPTVPAAPIPP 406
++P T PVS P P ++ P +PP
Sbjct: 242 KEPSTSVKPVSDPSPTKKVPVKKEPEVPP 270
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 28.3 bits (60), Expect = 3.7
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -2
Query: 456 PQPIRRAPTVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPPLRL 316
P P+ RA P AP RP G A+P A L P Q R PP R+
Sbjct: 126 PMPVSRAGGPPRAPTSMGGRPMTGMARPPTAGLRPVTQQGLRA-PPSRM 173
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.3 bits (60), Expect = 3.7
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -2
Query: 486 PVTKALPVSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 307
P P P+P R P +PA+P PP RP ++P+ + L Q + L P V P
Sbjct: 86 PAKPTPPPPPPKPTIRPPPIPASP-PP--RPPASEPV-GIPLYSEKQHQQQLRPTTAVSP 141
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.3 bits (60), Expect = 3.7
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -2
Query: 486 PVTKALPVSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 307
P P P+P R P +PA+P PP RP ++P+ + L Q + L P V P
Sbjct: 308 PAKPTPPPPPPKPTIRPPPIPASP-PP--RPPASEPV-GIPLYSEKQHQQQLRPTTAVSP 363
>AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine
receptor, class h protein247 protein.
Length = 325
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 6 YVYYLGNTITFFFFPVQNRGFLCMLIKVKQR 98
++ + N ITFF PV G C+L K +R
Sbjct: 15 FLISISNVITFFEIPVCTFGAYCILFKTPER 45
>AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18b protein.
Length = 586
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -2
Query: 468 PVSH-PQPIRRAPTVPAAPIPPQARPGQAQPLQA 370
P++H P P+ PT P P P A P QA A
Sbjct: 265 PLAHLPAPVAIYPTPPPPPAPAPAAPQQASAAPA 298
>AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18a protein.
Length = 946
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -2
Query: 468 PVSH-PQPIRRAPTVPAAPIPPQARPGQAQPLQA 370
P++H P P+ PT P P P A P QA A
Sbjct: 625 PLAHLPAPVAIYPTPPPPPAPAPAAPQQASAAPA 658
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -2
Query: 435 PTVP-AAPIPPQARPGQAQP 379
P++P P+PPQ PGQA P
Sbjct: 406 PSLPDMGPLPPQTAPGQAAP 425
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Frame = -2
Query: 507 GIEGIQDPVTKALPVSHPQPIRRAPTVPAAPIP---PQARPGQAQPLQAVLLPRA 352
G E + A P P+ +AP AP P P G A P A P A
Sbjct: 226 GDEQVTPAPAAAAPAPADAPVEQAPVAVPAPAPVAAPDVECGSAAPAPAAAAPAA 280
>AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical
protein Y39B6A.6 protein.
Length = 321
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 415 RCCWHCRCSSYRLWMTDR*RFCD 483
RCC + CS +R++ D R CD
Sbjct: 205 RCCGNAGCSDFRVFRQDIPRSCD 227
>AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical
protein Y44E3A.4 protein.
Length = 511
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = -2
Query: 486 PVTKALPVSHPQPIRRAPTVPA--APIPPQARPGQAQPLQAVLLP 358
P + V+ P P AP P+ AP P Q P P + P
Sbjct: 290 PKPAKISVADPPPSTIAPAAPSAPAPAPSQLNPTSTSPTMPAIAP 334
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = -2
Query: 450 PIRRAPTVPAAPIPPQ---ARPGQ--AQPLQAVLLPRAVQVHRTLP 328
P +AP P AP+ P+ ARP +P AV RA Q+ + P
Sbjct: 267 PSPKAPVAPVAPVKPKPFVARPAPNFGKPRAAVAPARAPQITQRAP 312
>Z81040-2|CAB02782.2| 466|Caenorhabditis elegans Hypothetical
protein C26E1.2 protein.
Length = 466
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -2
Query: 468 PVSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTL 331
P+ H P+ PT P+A +P R + + + LP ++ TL
Sbjct: 331 PMFHYSPVTPIPTAPSAELPSTTRAPKRKQSKQQKLPSIHELTGTL 376
>Z77133-3|CAB00868.2| 149|Caenorhabditis elegans Hypothetical
protein K03A11.5 protein.
Length = 149
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -3
Query: 314 CFQESSFRREQTFTQAWSRKICLCFENIFDIPYHLRKNI 198
C Q RE F+ A C+C N D PY + KN+
Sbjct: 15 CNQLKCKNREPDFSNA--NTTCVCHHNPSDYPYDICKNL 51
>Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical
protein M195.3 protein.
Length = 687
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -2
Query: 480 TKALPVSHPQPIRRAP--TVPAAPIPPQARPG 391
T++ + QPI P V AA +PP+ RPG
Sbjct: 567 TESTAIEIEQPIEAVPPEVVAAAVLPPEERPG 598
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,637,509
Number of Sequences: 27780
Number of extensions: 245910
Number of successful extensions: 949
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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