Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0693.Seq
         (618 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O23253 Cluster: Disease resistance Cf-2 like protein; n...    34   3.1  
UniRef50_P53266 Cluster: Protein SHY1; n=5; Saccharomycetales|Re...    33   4.1  
UniRef50_A1SQM7 Cluster: Cellulase precursor; n=1; Nocardioides ...    33   5.5  
UniRef50_A3GH59 Cluster: Vacuolar sorting; n=1; Pichia stipitis|...    32   9.5  

>UniRef50_O23253 Cluster: Disease resistance Cf-2 like protein; n=7;
           Arabidopsis thaliana|Rep: Disease resistance Cf-2 like
           protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 869

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 22/56 (39%), Positives = 28/56 (50%)
 Frame = +3

Query: 291 LSKFILVAVKVLCFSDQNKCLLN*QN*PSIPKPRRKRTILSFASLSRIKKNTFCLS 458
           LS  ILV  K LC  DQ   LL  +N  SIP P     +L   + ++ + NT C S
Sbjct: 14  LSNSILVIAKDLCLPDQRDALLEFKNEFSIPSP-DSDLMLILQTTAKWRNNTDCCS 68


>UniRef50_P53266 Cluster: Protein SHY1; n=5; Saccharomycetales|Rep:
           Protein SHY1 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 389

 Score = 33.5 bits (73), Expect = 4.1
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 338 SK*MSAELTKLTIDP*AAPKTYHPQLCISVPHKKKYILPFFIHN 469
           +K ++A  TKLT +P   PK++ P +C    ++K  +   F+HN
Sbjct: 99  TKLIAACETKLTYEPIPLPKSFTPDMCEDWEYRKVILTGHFLHN 142


>UniRef50_A1SQM7 Cluster: Cellulase precursor; n=1; Nocardioides sp.
           JS614|Rep: Cellulase precursor - Nocardioides sp.
           (strain BAA-499 / JS614)
          Length = 341

 Score = 33.1 bits (72), Expect = 5.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 563 EGCPTRPDGWQGQVR 607
           + CPT+PDGWQG +R
Sbjct: 168 DACPTKPDGWQGMLR 182


>UniRef50_A3GH59 Cluster: Vacuolar sorting; n=1; Pichia stipitis|Rep:
            Vacuolar sorting - Pichia stipitis (Yeast)
          Length = 3109

 Score = 32.3 bits (70), Expect = 9.5
 Identities = 16/46 (34%), Positives = 30/46 (65%)
 Frame = +2

Query: 404  HPQLCISVPHKKKYILPFFIHNRVQNRSIQKIY*GMVD*KIIMXVH 541
            H +L IS P + + +LPF ++ R+ +++++K + G+VD  I   VH
Sbjct: 2071 HLRLVISAPVEIENLLPFDLNYRLYDKNLKKDWKGLVDKGIKSYVH 2116


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,203,840
Number of Sequences: 1657284
Number of extensions: 10661853
Number of successful extensions: 20137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20135
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)