Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0693.Seq
         (618 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   1.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   1.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   1.6  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.3  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 403  PSSALHLCPA*KKIHSAFLHPQ 468
            PSS    C A + I +A LHPQ
Sbjct: 976  PSSLFFFCMAAEFIIAALLHPQ 997


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 403  PSSALHLCPA*KKIHSAFLHPQ 468
            PSS    C A + I +A LHPQ
Sbjct: 976  PSSLFFFCMAAEFIIAALLHPQ 997


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 379 SLSRAENVPSSALHLCPA*KKIH 447
           S +R  NVP ++ H   + KK+H
Sbjct: 50  SNNRLRNVPDNSFHFLRSLKKVH 72


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 164 NAFIKFIGTIEKTHK*IRDYILSYYVYFCL 253
           +AF+K +   ++T K I  + L  + + CL
Sbjct: 271 DAFLKEVADFQETLKKISQFQLDAHEFACL 300


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 164 NAFIKFIGTIEKTHK*IRDYILSYYVYFCL 253
           +AF+K +   ++T K I  + L  + + CL
Sbjct: 271 DAFLKEVADFQETLKKISQFQLDAHEFACL 300


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,542
Number of Sequences: 336
Number of extensions: 3115
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)