Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0693.Seq
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    25   8.8  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    25   8.8  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    25   8.8  

>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 392 PKTYHPQLCISVPHK-KKYILPFFIHNRVQNRSI 490
           P  + P+L I++P+  K+Y LP F+   VQ + I
Sbjct: 21  PPPFPPKL-INIPNPVKQYALPNFVSTLVQEKKI 53


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 390 RRKRTILSFASLSRIKKNTFCLSSSTTEFKTGLYRKY 500
           +RKR +L     + +KKN      +T +F T  Y+K+
Sbjct: 108 KRKRDLLLARERALLKKNELEGDDATEKFVTSSYKKH 144


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 520 LIYHTLIYFLYRPVLNSVVDEERQNVFFF 434
           L+YHT + +L R VL+   ++ RQ    F
Sbjct: 432 LLYHTTLTYLLRNVLDLFPEKSRQKSKLF 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,098
Number of Sequences: 5004
Number of extensions: 50124
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)