Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0693.Seq
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1224 + 31858110-31858338,31859180-31859301,31859398-318595...    29   2.2  
03_05_1155 + 30808985-30809084,30809531-30809632,30809727-308098...    27   9.0  

>04_04_1224 +
           31858110-31858338,31859180-31859301,31859398-31859507,
           31859661-31859725,31859940-31860004,31860387-31860632,
           31861212-31861313,31861484-31861534,31862015-31862105,
           31862777-31862841
          Length = 381

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 527 IMXVHWFSGDIXEGCPTRPDGW 592
           ++ VH FS D+  G P  P GW
Sbjct: 322 VVYVHPFSQDVMHGAPVMPQGW 343


>03_05_1155 +
           30808985-30809084,30809531-30809632,30809727-30809800,
           30810035-30810051,30810341-30810410,30810498-30810534,
           30811010-30811057,30811298-30811385,30811407-30811512,
           30812143-30812286
          Length = 261

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 92  YIFNILFVYEQLLVD-AINDICVQYDC 15
           Y++  +F  EQ +VD AINDICV + C
Sbjct: 60  YMYPSIF-QEQAVVDRAINDICVLFKC 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,563,955
Number of Sequences: 37544
Number of extensions: 265513
Number of successful extensions: 510
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)