Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0693.Seq
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical p...    28   4.6  
AF016433-6|AAB65391.1|  335|Caenorhabditis elegans Seven tm rece...    27   8.1  

>Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical
           protein Y57G11C.20 protein.
          Length = 649

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 544 PMNXHYNFLIYHTLIYFLYRPVLNSVVD 461
           P    Y  +I+HT+ +  Y P++NS +D
Sbjct: 592 PCKGKYGEMIHHTIPHPRYLPIMNSTID 619


>AF016433-6|AAB65391.1|  335|Caenorhabditis elegans Seven tm
           receptor protein 131 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 300 ISIISSQFFYQVLCQCKQK 244
           IS++S+QFFY+ L  C+ K
Sbjct: 102 ISLLSTQFFYRYLAVCRPK 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,508,638
Number of Sequences: 27780
Number of extensions: 269982
Number of successful extensions: 558
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)