Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0693.Seq
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13920.1 68417.m02154 disease resistance family protein / LRR...    34   0.087
At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putati...    29   2.5  
At2g21230.2 68415.m02521 bZIP family transcription factor contai...    27   7.5  
At2g21230.1 68415.m02520 bZIP family transcription factor contai...    27   7.5  
At3g54470.1 68416.m06026 uridine 5'-monophosphate synthase / UMP...    27   10.0 

>At4g13920.1 68417.m02154 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 891

 Score = 33.9 bits (74), Expect = 0.087
 Identities = 22/56 (39%), Positives = 28/56 (50%)
 Frame = +3

Query: 291 LSKFILVAVKVLCFSDQNKCLLN*QN*PSIPKPRRKRTILSFASLSRIKKNTFCLS 458
           LS  ILV  K LC  DQ   LL  +N  SIP P     +L   + ++ + NT C S
Sbjct: 14  LSNSILVIAKDLCLPDQRDALLEFKNEFSIPSP-DSDLMLILQTTAKWRNNTDCCS 68


>At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putative
           identical to peroxiredoxin (Rehydrin homolog)
           [Arabidopsis thaliana] SWISS-PROT:O04005; contains Pfam
           profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase
           and thiol-specific antioxidant) family
          Length = 216

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/65 (29%), Positives = 34/65 (52%)
 Frame = +1

Query: 394 ENVPSSALHLCPA*KKIHSAFLHPQPSSKQVYTENILRYGRLKNYNXGSLVQWRHSXRVS 573
           EN PS ALH+     KI  +FL+P  + + +  + +LR   L +     L+  +H+ +++
Sbjct: 117 ENGPSRALHIVGPDSKIKLSFLYPSTTGRNM--DEVLR--ALDSL----LMASKHNNKIA 168

Query: 574 XPSRW 588
            P  W
Sbjct: 169 TPVNW 173


>At2g21230.2 68415.m02521 bZIP family transcription factor contains
           a bZIP transcription factor basic domain signature
           (PDOC00036)
          Length = 460

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 391 AENVPSSALHLCPA*KKIHSAFLHPQPSSKQVYTENILRYGRLKNYNXGSLVQWRHSXRV 570
           + ++P   LHL PA  + H  F HP   +       I  Y ++      + +Q RHS  +
Sbjct: 24  SSSIPKHNLHLNPALIRSHHHFRHPFTGAPPPPIPPISPYSQIP-----ATLQPRHSRSM 78

Query: 571 SXPS 582
           S PS
Sbjct: 79  SQPS 82


>At2g21230.1 68415.m02520 bZIP family transcription factor contains
           a bZIP transcription factor basic domain signature
           (PDOC00036)
          Length = 519

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 391 AENVPSSALHLCPA*KKIHSAFLHPQPSSKQVYTENILRYGRLKNYNXGSLVQWRHSXRV 570
           + ++P   LHL PA  + H  F HP   +       I  Y ++      + +Q RHS  +
Sbjct: 24  SSSIPKHNLHLNPALIRSHHHFRHPFTGAPPPPIPPISPYSQIP-----ATLQPRHSRSM 78

Query: 571 SXPS 582
           S PS
Sbjct: 79  SQPS 82


>At3g54470.1 68416.m06026 uridine 5'-monophosphate synthase / UMP
           synthase (PYRE-F) (UMPS) identical to SP|Q42586 Uridine
           5'-monophosphate synthase (UMP synthase) [Includes:
           Orotate phosphoribosyltransferase (EC 2.4.2.10)
           (OPRtase); Orotidine 5'- phosphate decarboxylase (EC
           4.1.1.23) (OMPdecase)] {Arabidopsis thaliana}
          Length = 476

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 309 VAVKVLCFSDQNKCLLN*QN*PSIPKPRRKRTILSFASLSRIKKN 443
           V V +L F ++N+ +    + PS+ KP+ K  +L F   S + KN
Sbjct: 188 VEVNLLKFLEENRRV----SVPSVEKPKPKPRVLGFKERSELSKN 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,316,389
Number of Sequences: 28952
Number of extensions: 235189
Number of successful extensions: 405
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)