Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0692.Seq
         (449 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|R...    82   6e-15
UniRef50_Q29IY4 Cluster: GA10975-PA; n=1; Drosophila pseudoobscu...    33   2.2  
UniRef50_Q1N5H2 Cluster: SAM-dependent methyltransferase; n=1; O...    33   2.9  

>UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|Rep:
            Sericin 1 precursor - Bombyx mori (Silk moth)
          Length = 1186

 Score = 81.8 bits (193), Expect = 6e-15
 Identities = 36/38 (94%), Positives = 36/38 (94%)
 Frame = +1

Query: 142  TAKSDAVSSEDGFWWWNRRKSGSGXKSATVQSSTTDKT 255
            TAKSDA SSEDGFWWWNRRKSGSG KSATVQSSTTDKT
Sbjct: 1066 TAKSDAASSEDGFWWWNRRKSGSGHKSATVQSSTTDKT 1103



 Score = 34.7 bits (76), Expect = 0.94
 Identities = 17/25 (68%), Positives = 17/25 (68%)
 Frame = +2

Query: 344  GXSTSDAXSIXSXVXRSHHSXVNXL 418
            G STSDA S  S V RSHHS VN L
Sbjct: 1133 GSSTSDASSTSSSVSRSHHSGVNRL 1157



 Score = 33.9 bits (74), Expect = 1.6
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 142 TAKSDAVSSEDGF-WWWNRRKSGSGXKSATVQSS 240
           T  S A  S D + WWWN R+S S   SA+  SS
Sbjct: 532 TTVSGADDSADSYTWWWNPRRSSSSSSSASSSSS 565


>UniRef50_Q29IY4 Cluster: GA10975-PA; n=1; Drosophila
           pseudoobscura|Rep: GA10975-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 331

 Score = 33.5 bits (73), Expect = 2.2
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 101 VPAQVEELXPXQCXP-PKATPCHLKTV 178
           +  +VEEL P +C P P  TPCHL  V
Sbjct: 65  IEQEVEELEPGECRPEPSVTPCHLPWV 91


>UniRef50_Q1N5H2 Cluster: SAM-dependent methyltransferase; n=1;
           Oceanobacter sp. RED65|Rep: SAM-dependent
           methyltransferase - Oceanobacter sp. RED65
          Length = 258

 Score = 33.1 bits (72), Expect = 2.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 136 LXWXKLLHLCWNRRWMLRFHHGYWNLYP-SVLXPADVVD 23
           + W  L++  W R     FHH   NL P + L PADVV+
Sbjct: 158 IVWRNLMNGSWQRAQNTHFHHDKNNLMPQNPLNPADVVE 196


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.313    0.123    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 289,129,338
Number of Sequences: 1657284
Number of extensions: 3624563
Number of successful extensions: 9105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9093
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)