Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0692.Seq
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   4.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   5.4  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    20   9.4  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = -2

Query: 106 WNRRWMLRFHHGYWNLYPSVLXPADVVDSS 17
           W     L  HH +W+L        ++VD +
Sbjct: 197 WREDIGLNLHHWHWHLVYPFEGAREIVDKN 226


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
          protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -2

Query: 79 HHGYWNLYP 53
          HHG WN  P
Sbjct: 72 HHGQWNYSP 80


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 164 HLKTVSGGGIEGNQD 208
           H+KT +G G +G+ D
Sbjct: 393 HVKTHNGNGKKGSSD 407


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.313    0.123    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,475
Number of Sequences: 336
Number of extensions: 988
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)