Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0692.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0120 + 1241241-1241321,1242827-1242857,1242999-1243612,124...    29   1.3  
01_02_0008 + 10134687-10135019                                         29   1.7  
11_06_0150 - 20640535-20640600,20641299-20641451,20641567-20641830     27   9.2  

>04_01_0120 +
           1241241-1241321,1242827-1242857,1242999-1243612,
           1243726-1243796,1244233-1244478,1245267-1245393,
           1245993-1246185,1246656-1247209
          Length = 638

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 77  MEA*HPPTVPAQVEELXPXQCXPPKATPCHLKTVSGGGI 193
           ME   PP +P Q+ +  P    P +ATP  L     GGI
Sbjct: 1   MELRSPPPLPDQLGQPPPSPVPPARATPNGLNCRDSGGI 39


>01_02_0008 + 10134687-10135019
          Length = 110

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 123 SSSTCAGTVGGCYASIMATGTYILQCC 43
           SSS+ AGT   C+ S++ T T   +CC
Sbjct: 30  SSSSSAGTRPSCWRSVVTTATARRRCC 56


>11_06_0150 - 20640535-20640600,20641299-20641451,20641567-20641830
          Length = 160

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 143 PPKATPCHLKTVSGGGIEGN 202
           PP  TP HL+   GG + GN
Sbjct: 19  PPTPTPTHLRRGDGGYVPGN 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.123    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,523,851
Number of Sequences: 37544
Number of extensions: 119920
Number of successful extensions: 340
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)