Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0692.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28741-3|AAA68327.2|  410|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical...    27   4.8  

>U28741-3|AAA68327.2|  410|Caenorhabditis elegans Hypothetical
           protein F35D2.1 protein.
          Length = 410

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
 Frame = +2

Query: 95  PTVPAQV--EELXPXQCXPPKATPCHLKTVSG-----GGIEGNQDPVXKALPYS 235
           PT+P     ++  P  C PP   P H+  + G     GG +G +  +  A+P S
Sbjct: 176 PTLPMGQFGKQFMPMSCKPPLCNPYHMNLMMGVEHMWGGPDGAEGEIDVAIPMS 229


>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
           protein Y75B8A.13 protein.
          Length = 1420

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 98  TVPAQVEELXPXQCXPPKATPCHLKTVSGGGIEGNQDPVXKA 223
           T P Q EEL       P+A+P   +TV    IE   D   +A
Sbjct: 506 TAPPQEEELFDDALEDPEASPKSPETVDAAPIEEGSDAAPEA 547


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.313    0.123    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,693,557
Number of Sequences: 27780
Number of extensions: 86555
Number of successful extensions: 198
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)