Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0692.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06320.1 68418.m00708 harpin-induced family protein / HIN1 fa...    29   1.1  
At1g15210.1 68414.m01818 ABC transporter family protein Similar ...    27   7.7  

>At5g06320.1 68418.m00708 harpin-induced family protein / HIN1
           family protein / harpin-responsive family protein /
           NDR1/HIN1-like protein 3 similar to harpin-induced
           protein hin1 (GI:1619321)[Nicotiana tabacum]
          Length = 231

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -3

Query: 198 PSIPPPETVFR*HGVAFGGXH*XGXSSSTCAGTVGGCYASIM 73
           PSIPPP+ V   HG   GG    G     C G  G C  S++
Sbjct: 11  PSIPPPKKVSHSHGRRGGGCGCLG----DCLGCCGCCILSVI 48


>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
           gb|Z70524 GI:1514643 PDR5-like ABC transporter from
           Spirodela polyrrhiza and is a member of the PF|00005 ABC
           transporter family. ESTs gb|N97039 and gb|T43169 come
           from this gene
          Length = 1442

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 124 KLLHLCWNRRWMLRFHHGYWNLYPSV 47
           +LL  CW++ WML   + ++ ++ +V
Sbjct: 520 ELLKSCWDKEWMLMKRNSFFYVFKTV 545


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.123    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,456,253
Number of Sequences: 28952
Number of extensions: 86169
Number of successful extensions: 172
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)