Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0691.Seq
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    27   2.2  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    27   2.9  
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    26   3.9  
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    26   5.1  
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr...    25   6.8  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    25   6.8  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.8  

>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 395 CVSAQECRDINERTKNREKRDIPECGYN-EVLSDSKNKCSP 514
           C S+ + + I   TKN  K  IPE   + EV ++S+  C P
Sbjct: 316 CSSSDDAKPITFVTKNLRKFPIPEWRSSLEVQAESEQSCLP 356


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 296 DDVDVTPVPCNEFIQSSPRCICKDNYFRN 382
           DD D++P   + FIQS+P+   K N   N
Sbjct: 416 DDFDMSPFIDDSFIQSNPKISTKYNLVAN 444


>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -1

Query: 225 DSLWLAHIARHPDSRAY--NLVYKRSPDYTGRGASKQLQRGCRLLDNSRWDSQLCRIRAF 52
           +SLW   +A+HP +  Y   +V    P+   +   K+L++        +W     R R +
Sbjct: 24  ESLWYETVAKHPPTFQYARRIVPLYDPNKV-KSRGKRLRKSMYQPQEIQWPEDKLRKRFY 82

Query: 51  RLHCTDL 31
           R H  +L
Sbjct: 83  RDHPWEL 89


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 308 VTPVPCNEFIQSSPRCICKDNYFRNDSGICVSAQECRDINERTKNREKR 454
           V P PC+E  Q +P  + +      + G+  +  +   +  R K REKR
Sbjct: 9   VWPFPCDEMNQKTPSTVEEIRIALQELGLSTNGNK-EKLKRRWKFREKR 56


>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = -3

Query: 484 YFVITTFRYVTLLAILRTLIYVATFLSGNADSAIVPEVIIFADASRAALYKLVTRYRSNV 305
           Y  +  F Y++    L+ +    +FL GN     +P    F ++SRA+   ++ +Y+  V
Sbjct: 81  YAALPRFLYLSYCGKLKKM----SFLLGNTKEFAIPNNGYFVESSRAS---ILYQYQGGV 133

Query: 304 DIIAGFL*TGRW*RAP 257
            +I        + RAP
Sbjct: 134 QVIVSGHLRAHFFRAP 149


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 105 DSRAVVACSPPYPCNPGCVCKPNYKLLSQDDERCVLTT 218
           D+++    +PP P   G   K + K  S DDE  VL T
Sbjct: 519 DAKSSKTNTPPSPLLVGTPSKESLKEASSDDELPVLAT 556


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 341 SSPRCICKD-NYFRNDSGICVSAQECRDINERTKNREKRDIPEC 469
           S P+ IC+     ++DS  C + Q+ + INE +K +     P C
Sbjct: 74  SDPKVICRTCQPKQHDSIWCTACQQTKGINEFSKAQRHVLDPRC 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,095
Number of Sequences: 5004
Number of extensions: 55460
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)