Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0691.Seq
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622     30   1.7  
09_01_0020 + 413723-413738,413867-413934,414849-415144,415275-41...    29   3.0  
11_04_0014 - 12253341-12253358,12253520-12253729,12254388-122545...    29   4.0  
02_01_0069 + 491452-492594                                             28   7.0  
11_06_0056 + 19677556-19677610,19677764-19677984                       27   9.2  
04_01_0333 - 4391571-4392289,4393048-4393159                           27   9.2  
04_04_0680 - 27217563-27220088                                         24   9.8  

>01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622
          Length = 288

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +2

Query: 257 WSPSPPPCLQETC---DDVDVTPVPCNEFIQSSPRCICKDN 370
           W+P  P C +  C   DDVD       EF+Q   R +C+ +
Sbjct: 236 WTPRRPRCRRCCCAASDDVDAALRALVEFLQEKKRAMCRSH 276


>09_01_0020 +
           413723-413738,413867-413934,414849-415144,415275-415400,
           415484-415566,416514-416628,416755-416847,416963-417021,
           417609-417684,417812-417901,418050-418202,418294-418480,
           418752-418839,419077-419125,419233-419329
          Length = 531

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +3

Query: 57  LVSCKAGCPTDYCPTSDSRAVVACSPPYPCNPGCVCKPNYKLLSQDDERCVLTTD 221
           L SC  G  T  C T+D   V  C      NPG     + +L  Q DE  +L+ D
Sbjct: 31  LGSCDQGWTTLQCDTNDRETVRLC----VLNPGLAVACHLELELQKDENVLLSVD 81


>11_04_0014 -
           12253341-12253358,12253520-12253729,12254388-12254523,
           12254631-12254752,12254789-12254842,12254872-12255161,
           12255737-12255948,12256008-12256475,12256560-12256856,
           12257467-12258329,12258417-12258490,12258616-12258650,
           12259024-12259087,12259452-12259733,12259870-12259946,
           12260045-12260325
          Length = 1160

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
 Frame = +3

Query: 60  VSCKAGCPTDYCPTSDSRAVVACSPPYPCNPGC----------VCKPNY-KLLSQDDERC 206
           + C+A CP  +CP       + C  P P    C          +C P Y +  S    RC
Sbjct: 194 LDCQACCPGFFCPHG-----LTCMIPCPLGAYCPLSSLNKTTGICDPFYCRKGSTSQTRC 248

Query: 207 VLTTDCPPVNCTR 245
              + CPP + T+
Sbjct: 249 YKKSSCPPNSATQ 261


>02_01_0069 + 491452-492594
          Length = 380

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 81  PTDYCPTSDSRAVVACSPPYPCNPGCVCKPNYKLLSQDDE 200
           P  +    DS   V    P+  NPGC     Y LL  DD+
Sbjct: 117 PISFTTAGDSCLYVIERVPFSGNPGCFEALTYGLLPDDDD 156


>11_06_0056 + 19677556-19677610,19677764-19677984
          Length = 91

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -1

Query: 129 SKQLQRGCRLLDNSRWDSQLCRIRAFRLHCTDLQ 28
           S  +    R+ +  R D+ +C+   F++HC D++
Sbjct: 17  SSDMTMAARMTNYGRLDAPVCKKITFKVHCDDIK 50


>04_01_0333 - 4391571-4392289,4393048-4393159
          Length = 276

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 33  GPCNANETLVSCKAGCPTDYCPTSDSRAVVAC 128
           G C+A        A CP+D    S + AVVAC
Sbjct: 177 GDCHAVSCAGDVNAACPSDLRVVSGAGAVVAC 208


>04_04_0680 - 27217563-27220088
          Length = 841

 Score = 24.2 bits (50), Expect(2) = 9.8
 Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = +3

Query: 96  PTSDSRAVVACSP-PYPCNPGCVCKP 170
           P +D   ++   P  Y C P C C P
Sbjct: 632 PFNDKGRILEAKPLVYECGPSCKCPP 657



 Score = 21.4 bits (43), Expect(2) = 9.8
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +3

Query: 204 CVLTTDCPPVNCTRPNESGARHHRPVYKKPAM 299
           C  +  CPP    R  + G R    V+K   M
Sbjct: 649 CGPSCKCPPTCHNRVGQHGLRFRLQVFKTKLM 680


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,483,988
Number of Sequences: 37544
Number of extensions: 401139
Number of successful extensions: 1178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)