Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0691.Seq
(627 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.062
SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.082
SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 33 0.14
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 33 0.14
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87) 32 0.44
SB_41085| Best HMM Match : Auxin_repressed (HMM E-Value=9) 32 0.44
SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_55110| Best HMM Match : Squash (HMM E-Value=0.21) 31 1.0
SB_50778| Best HMM Match : PA14 (HMM E-Value=0.00025) 30 1.3
SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_24516| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 29 2.3
SB_38846| Best HMM Match : Cache (HMM E-Value=2.7e-09) 29 3.1
SB_3385| Best HMM Match : 3_5_exonuc (HMM E-Value=0.0015) 29 3.1
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 29 3.1
SB_4999| Best HMM Match : EGF_CA (HMM E-Value=0) 29 3.1
SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13) 29 4.1
SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13) 29 4.1
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_25695| Best HMM Match : PDEase_I (HMM E-Value=3.1e-36) 29 4.1
SB_4149| Best HMM Match : VWA (HMM E-Value=0) 29 4.1
SB_49785| Best HMM Match : EGF (HMM E-Value=0.00078) 29 4.1
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34) 28 5.4
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20) 28 5.4
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35) 28 7.1
SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_8580| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0) 28 7.1
SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14) 28 7.1
SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15) 23 7.5
SB_27050| Best HMM Match : Pkinase_Tyr (HMM E-Value=1e-06) 27 9.4
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40) 27 9.4
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 27 9.4
SB_56395| Best HMM Match : MACPF (HMM E-Value=0.00093) 27 9.4
SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06) 27 9.4
SB_30068| Best HMM Match : MoeA_C (HMM E-Value=2.9e-15) 27 9.4
SB_11968| Best HMM Match : zf-TRAF (HMM E-Value=0.32) 27 9.4
SB_6171| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 34.7 bits (76), Expect = 0.062
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 63 SCKAGCPTDYCPTSDSRAVVACSPPYPCNPGCVCKPNYKLL 185
SCK CP CP + + V CS + C P C K K+L
Sbjct: 1500 SCKPNCPIKCCPATAIKCPVGCS-EHSCKPECPSKCCMKVL 1539
Score = 33.1 bits (72), Expect = 0.19
Identities = 24/66 (36%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Frame = +3
Query: 63 SCKAGCPTDYCPTSDSRAVVACSPPYPCNPGC------VCKPNYKLLSQDDERCVLTTDC 224
SCK CP C T A A P C P C VC PN S C C
Sbjct: 1651 SCKPDCPARCCTTEPLSACPATCSPDSCRPECPLICCSVCPPNCSAQS-----C--GNFC 1703
Query: 225 PPVNCT 242
PP CT
Sbjct: 1704 PPKCCT 1709
Score = 31.9 bits (69), Expect = 0.44
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Frame = +3
Query: 66 CKAGCPTDYCPTSDS-------RAVVACSPPYPCNPGCVCKPNYKLLSQDDERCVLTTDC 224
C A CPT C +D+ ACSP CNP C + +L +E+ T +C
Sbjct: 1379 CGAECPTQCCLLADNGQHSSTASCPSACSPS-GCNPDCPARCCITVLQPLNEKHNTTAEC 1437
Query: 225 P 227
P
Sbjct: 1438 P 1438
Score = 31.9 bits (69), Expect = 0.44
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Frame = +3
Query: 66 CKAGCPTDYCPTSDSRAVVACSPPYP---CNPGC--VCKPN 173
C CP DYC T V PP+P C P C +C+P+
Sbjct: 1946 CVDSCP-DYCCTWKGNQVQMAHPPHPVPTCPPSCNLICRPD 1985
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = +3
Query: 6 SSTAHNTTEGPCNANETLVSCKAGCPTDYCPTSDSRAVVACSPPYPCNPGC 158
++ NT C L SCK CP C S CS P C C
Sbjct: 1542 TTLGQNTANSLCPVY-CLTSCKPDCPIKCCTKLSSSCPADCS-PQNCKSSC 1590
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/66 (21%), Positives = 26/66 (39%)
Frame = +3
Query: 66 CKAGCPTDYCPTSDSRAVVACSPPYPCNPGCVCKPNYKLLSQDDERCVLTTDCPPVNCTR 245
C + CP C + + + + P P P + + + T DCP C++
Sbjct: 1833 CISKCPEKCCKQPEPQPALLSTTPTPPPPPQPHQQQQQPTCSTSCLTLCTPDCPKKCCSK 1892
Query: 246 PNESGA 263
P + G+
Sbjct: 1893 PTKVGS 1898
>SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 34.3 bits (75), Expect = 0.082
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +2
Query: 296 DDVDVTPVPCNEF-IQSSPRCICKDNYFRNDSGICVSAQECRDINERTKNREKRDIPECG 472
DD+ +T C + ++P C F+ SG C+S D + +R D +C
Sbjct: 209 DDITITTENCTTSPVYAAPGYKCASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGCKCF 268
Query: 473 YNEVLSDSKNKCSPS 517
NE L+ S +C PS
Sbjct: 269 TNE-LTCSSGRCVPS 282
>SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1678
Score = 33.9 bits (74), Expect = 0.11
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 344 SPRCICKDNYFRNDSGICVSAQECRD 421
S +C CK Y NDS +CV EC +
Sbjct: 808 SYKCSCKRGYAHNDSNVCVDVNECTE 833
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 33.5 bits (73), Expect = 0.14
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +3
Query: 60 VSCKAGCPTDYCPTSDSRAVVACSPPYPCNPGCVCKPNYKLLSQDDERCVLTTDCPPVNC 239
V C G TD T+DS V + YPC PG C+ S D ++ CP
Sbjct: 3550 VICLEGAITDNPSTNDSSYGVEVTKSYPCPPGWYCE------SGD----IVPRPCPNGTY 3599
Query: 240 TR-PNESGARHHRPVYK 287
PN S ++H RP K
Sbjct: 3600 NAFPNASSSQHCRPCAK 3616
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 39 CNANETLVSCKAGCPTDYCPTSDSRAVVACSPPYPCNPGCVC 164
CN + + C AG YCP + S+ V+ C P + C+P C
Sbjct: 3452 CNRSMSQAPCPAGY---YCPRNSSQPVL-CPPGHYCDPKLNC 3489
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Frame = +3
Query: 48 NETLVSCKAGCPTDYCPTSDSRAVVACSPPYPCNPGCVCKPNYKLLSQDDERCVLTTDCP 227
N L C YC + V A PC G C P + ++ C L CP
Sbjct: 519 NTALSDCNDCTEGYYCEGGGNTRVTA-----PCCEGSYCPPRQSVCKPNEYNCTLGHKCP 573
Query: 228 -----PVNC 239
PV C
Sbjct: 574 LGSPEPVRC 582
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +2
Query: 296 DDVDVTPVPCNEF-IQSSPRCICKDNYFRNDSGICVSAQECRDINERTKNREKRDIPECG 472
DD+ +T C + ++P C F+ SG C+S D + +R D +C
Sbjct: 1082 DDIMITTENCTTSPVYAAPGYKCASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGCKCF 1141
Query: 473 YNEVLSDSKNKCSPS 517
NE L+ S +C PS
Sbjct: 1142 TNE-LTCSSGRCVPS 1155
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +2
Query: 296 DDVDVTPVPCNEF-IQSSPRCICKDNYFRNDSGICVSAQECRDINERTKNREKRDIPECG 472
DD+ +T C + ++P C F+ SG C+S D + +R D +C
Sbjct: 172 DDIIITTENCTTSPVYAAPGYKCASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGCKCF 231
Query: 473 YNEVLSDSKNKCSPS 517
NE L+ S +C PS
Sbjct: 232 TNE-LTCSSGRCVPS 245
>SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87)
Length = 770
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 132 PPYPCNPGCVCKPNYKLLSQDDERCVLTTDCPP 230
P C PG CK N ++ + D+R +DCPP
Sbjct: 629 PSSDCPPGLWCKRNNEVPRRSDKRVDRISDCPP 661
>SB_41085| Best HMM Match : Auxin_repressed (HMM E-Value=9)
Length = 206
Score = 31.9 bits (69), Expect = 0.44
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +3
Query: 99 TSDSRAVVACSPPYPCNPGCVCKPNYKLLSQDDERCVLTTD 221
T S V SP P NPG + P ++ QD E TTD
Sbjct: 86 TPPSAGTVGASPSNPANPGTIYNPFDRITYQDTEARDTTTD 126
>SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 31.9 bits (69), Expect = 0.44
Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 1/106 (0%)
Frame = +3
Query: 81 PTDYCPTSDSRAVVACSPPYPCNPGCVCKPNYKLLSQDDERCVLTTDCPPVNCTRPNESG 260
P +Y P CSP C P C P + E C +CPP P E
Sbjct: 115 PEEYSPLGGYSPPEECSPNGECFPSEECSPPGEY--YPPEECSPHGECPP-----PEECS 167
Query: 261 ARHHRPVYKK-PAMMSTLLRYLVTSLYKAALDASAKIITSGTIAES 395
H P+ K P + + LL V L L ++ S + E+
Sbjct: 168 PGEHVPLLKNVPLLENVLLLENVPLLKNVRLMEHVPLLKSVPLLEN 213
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Frame = +3
Query: 9 STAHNTTEGPCNANETLVSCKAGCPTDYCPTSDSRAVVACSPPYPCNP--GCVCKPNYKL 182
++ T N E S + P + P + CS P C+P C Y
Sbjct: 61 ASTFETLGADLNEKECSPSGECSTPEECSPPRECSPPGECSTPEKCSPHGECYAPEEYSP 120
Query: 183 LS--QDDERCVLTTDC-PPVNCTRPNE 254
L E C +C P C+ P E
Sbjct: 121 LGGYSPPEECSPNGECFPSEECSPPGE 147
>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1107
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +3
Query: 81 PTDYCPTSDSRAVVACSPPYPCNP-GCVCKPNYKLLSQDDE-RCVLTTDCP 227
PT +S V SP PCN C P K + Q+D+ CV +CP
Sbjct: 914 PTGVTSSSGEAMDVTASPSAPCNGFSCDSPPYSKCVVQNDKPTCVCQLNCP 964
>SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)
Length = 573
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +3
Query: 9 STAHNTTEGPCNANETLVSCKAGCPTDYCPTSDSRAVVACSPPYPCNPGCVCKPNYK 179
S+ T E C A T ++ C Y D + S PC PG +CKP K
Sbjct: 473 SSTSCTVESDCEAGMTCLTKLKAC-MKYRQKGDLCLIQPASFVSPCAPGLMCKPTNK 528
>SB_50778| Best HMM Match : PA14 (HMM E-Value=0.00025)
Length = 1266
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = -3
Query: 508 TLIFGIRQYFVITTFRY-VTLLAILRTLI-YVAT 413
T IFG YFV+T FRY +T++ T++ YV T
Sbjct: 108 TAIFGRLMYFVVTAFRYDITVVGYAITVVNYVIT 141
>SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 12 TAHNTTEGPCNANETLVSC-KAGCPTDYCPTSDSRAVVACSPPYPCNPGCVCKPNYK 179
TA+ T A +C KA CPT YCPT+ +R C Y P C Y+
Sbjct: 917 TAYCPTAYCLTAYHPTANCTKAYCPTAYCPTA-NRPTAYCPTAY--LPTAYCPTAYR 970
>SB_24516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +3
Query: 201 RCVLTTDCPPVNCTRPNESGARHHRPVYKKPAMMSTLLRYLVTSLYKAALDASAKI 368
R V DC P+N + R V KPA + L+ +VT+ YK D I
Sbjct: 10 RVVQRADCRPLNPSNDYFLHKRKSIQVASKPARQAQQLKKIVTNAYKPVSDHKMNI 65
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 350 RCICKDNYFRNDSGICVS---AQECRDINER 433
RCICKD Y N + C++ A +C+D++ R
Sbjct: 209 RCICKDGYMGNGT-TCIAEVFATDCQDLHTR 238
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 299 DVDVTPVPCNEFIQSSPRCICKDNYFRNDSGICVSA 406
D+ + + + Q P C N FR DSG C+S+
Sbjct: 2763 DIAIDDLSFDNCFQPDPPSSCSSNQFRCDSGHCISS 2798
>SB_38846| Best HMM Match : Cache (HMM E-Value=2.7e-09)
Length = 916
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 12/89 (13%)
Frame = +3
Query: 33 GPCNANETLVSCKAG----C----PTDYCPTSDSRAVVACSPPYPCNPGCVCK-PNYKLL 185
G C +N L SC + C P CP S + C YP + +C P LL
Sbjct: 673 GSCYSNGALCSCSSDKERTCSYISPDCQCPCSSTLDFNYCDSEYPLSNVSICAVPAEALL 732
Query: 186 SQDDERCVLTTD---CPPVNCTRPNESGA 263
+ ++++ + D C C+ GA
Sbjct: 733 TSEEKQACVPRDLQKCYDPKCSEKTTEGA 761
>SB_3385| Best HMM Match : 3_5_exonuc (HMM E-Value=0.0015)
Length = 437
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 386 SGICVSAQECRDINERTKNREKRDIPECGYNEVLSDSKNKCSPS 517
S +C+ A+ D++ K +E +D+ +CG E + +++ SP+
Sbjct: 62 SSLCIKAE---DVDAFAKLKENKDLVDCGNVETVFEAEGASSPN 102
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 296 DDVDVTPVPC-NEFIQSSPRCICKDNYFRNDSGICVSAQECRDINERTKNREKRDIPECG 472
DD+ +T C + ++P C F+ SG C+S D + +R D +C
Sbjct: 187 DDIMITTEKCATSPLYAAPGYKCAPYEFQCTSGHCISGSSRCDGDYNCMDRSDEDGCKCF 246
Query: 473 YNEVLSDSKNKCSPS 517
NE L+ S +C S
Sbjct: 247 TNE-LTCSSGRCVQS 260
>SB_4999| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1054
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 359 CKDNYFRNDSGICVSAQECRD 421
CK Y NDS +CV EC +
Sbjct: 34 CKRGYAYNDSNVCVDVNECTE 54
>SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
Length = 609
Score = 28.7 bits (61), Expect = 4.1
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Frame = +3
Query: 18 HNTTEGPCNANETLVSCKAGCPTDYCPTSDSRAVVACSPPY---PCNPGCVCKPN----Y 176
H T G + L+ + C T CP R + PP NP VC N +
Sbjct: 277 HTTEPGKKCDQDLLIGIQV-CNTQPCPKQ--RVIRPSHPPGMFGDMNPEPVCGFNPCEEF 333
Query: 177 KLLSQDDERCVLTTDCPPV 233
+++D +CV T+C PV
Sbjct: 334 GCFNRNDAKCVTDTNCNPV 352
>SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
Length = 366
Score = 28.7 bits (61), Expect = 4.1
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Frame = +3
Query: 18 HNTTEGPCNANETLVSCKAGCPTDYCPTSDSRAVVACSPPY---PCNPGCVCKPN----Y 176
H T G + L+ + C T CP R + PP NP VC N +
Sbjct: 277 HTTEPGKKCDQDLLIGIQV-CNTQPCPKQ--RVIRPSHPPGMFGDMNPEPVCGFNPCEEF 333
Query: 177 KLLSQDDERCVLTTDCPPV 233
+++D +CV T+C PV
Sbjct: 334 GCFNRNDAKCVTDTNCNPV 352
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +3
Query: 81 PTDYCPTSDSRAVVACSPPYPCNPGCVCKPNYKLLSQDDERCVLT-TDCPP-VNCTRPNE 254
P Y P S+ + C P C+P + N+ S + +T +DCP C E
Sbjct: 1383 PGSYQPFSEKGICLKCPPGMYCDPN-EARVNFSCSSVNVSHGTITPSDCPAGFYCPNETE 1441
Query: 255 SGARHHRPV 281
++H PV
Sbjct: 1442 WASQHPCPV 1450
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Frame = +3
Query: 78 CPTD-YCPTSDSRAVVACSPPYPCNPGC----VCKPNYKLLSQDDERCVLTTDC 224
CP YCP S C PY C PG +C + L++D R + +C
Sbjct: 3033 CPGGHYCPNG-SDTYTPCEYPYYCPPGSGFPKLCDLGHFALTKDKPRASVEANC 3085
>SB_25695| Best HMM Match : PDEase_I (HMM E-Value=3.1e-36)
Length = 646
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +2
Query: 401 SAQECRDINERTKNREKRDIPECGYNEVLSDSKNKCSPSDL*EHIHYVFM*SLGVMK 571
+ Q+ +I+ T +R +D+ E GY + N C +D+ +HY F+ +GV K
Sbjct: 457 NVQKAFEIHAMTLDRFLQDV-ETGYKRHSNPYHNDCHAADVTHTVHY-FLECMGVSK 511
>SB_4149| Best HMM Match : VWA (HMM E-Value=0)
Length = 1141
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +3
Query: 126 CSPPYPCNPGCVCKPNYKLLSQDDERC 206
C PP P PG C P + DE C
Sbjct: 658 CPPPPPLPPGGTCPPQPSVNCSTDENC 684
>SB_49785| Best HMM Match : EGF (HMM E-Value=0.00078)
Length = 261
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 84 TDYCPTSDSRAVVACSPPYPCNPGCVCKPN 173
TD C SD+ V + +PC G C P+
Sbjct: 150 TDECNASDTTTVTVKAMEFPCQHGGTCHPH 179
>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
Length = 1691
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 3 NSSTAHNTTEGPCNANETLVSCKAGCPTDYCPTSDSRAVVACSPPYPCN-PGCVCK 167
++ T ++T PCNA+ ++S CP+ ++ +R ++ + P N P V K
Sbjct: 454 SNDTITDSTGRPCNASSLVLSSDTTCPSLSISSTHNRTAISSNSRDPRNMPTSVSK 509
>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
Length = 359
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = +2
Query: 395 CVSAQECRDINERTKNREKRDIPECGYNEVLSDSKNKC 508
C S +EC E RE ECG +K +C
Sbjct: 48 CESTRECESTRECESTRECESTRECGSTTKCESTKEEC 85
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 27.9 bits (59), Expect = 7.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 353 CICKDNYFRNDSGICVSAQECR 418
C C D +D+G CV + +C+
Sbjct: 1252 CYCPDGLIMHDNGTCVQSMQCQ 1273
>SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)
Length = 850
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +2
Query: 284 QETCDDVDVTPVPCNEFIQSSPRCICKDNY-FRNDSGICVSAQECRD 421
+ TCD V V + S RC C Y RNDS C EC D
Sbjct: 253 KHTCDQVCVNTI-------GSFRCGCNVGYTLRNDSKTCSDIDECLD 292
>SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1800
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Frame = +3
Query: 57 LVSCKAGCPTDYCPTSDSRAVVAC-SPPYP-----CNPGCVCKP 170
L SC C TD PT AC + P+P CN C P
Sbjct: 304 LESCNTACQTDPFPTGLESCNTACQTDPFPTGLESCNTACQTDP 347
>SB_8580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +3
Query: 156 CVCKPNYKLLS---QDDERCVL-TTDCP-PVNCTRPNESGARHHRPVY 284
C CKP Y L++ +D + C L +CP +C N S +P Y
Sbjct: 230 CKCKPGYTLVNNTCEDIDECALGVANCPASADCVNNNGSYTCRCKPGY 277
>SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 165
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 353 CICKDNYFRNDSGICVSAQECR 418
C C + Y RN G C EC+
Sbjct: 27 CQCAEGYERNSQGKCADVNECK 48
>SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)
Length = 708
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 21 NTTEGPCNANETLVSCKAGCPTDYCPTSDSRAVVACSP 134
+T E P ++++T VS T YCPT ++ + + P
Sbjct: 370 DTPESPSSSSDTPVSPVLNASTQYCPTVPNKPLPSFLP 407
>SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)
Length = 1215
Score = 23.4 bits (48), Expect(2) = 7.5
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = +3
Query: 48 NETLVSCKAGCPTDYCPTSDSRAVVACSPPYPCNPG 155
N T +C AG TD+ + ++ C + C G
Sbjct: 273 NATRKACPAGTYTDFHNLTAAQECTPCPERFSCQAG 308
Score = 22.6 bits (46), Expect(2) = 7.5
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 132 PPYPCNPGCVC 164
PP PC PG C
Sbjct: 315 PPQPCAPGYFC 325
>SB_27050| Best HMM Match : Pkinase_Tyr (HMM E-Value=1e-06)
Length = 571
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 461 PECGYNEVLSDSKNKCSPSDL*EH 532
PECG++ L +CS DL +H
Sbjct: 113 PECGFDNELCTPAGQCSKGDLEDH 136
>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
Length = 1413
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 296 DDVDVTPVPCNEFIQSSPRCICKDNYFRNDSGIC 397
DDV+ + C++ + +S C C D+ +N SG C
Sbjct: 33 DDVNNSSGSCDDDVNNSSGCCCDDD-VKNSSGGC 65
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Frame = +3
Query: 24 TTEGPCNANETLVSCKAGCPTDYCPTSDSRAVVACSPPYPCNPG----------CV-CKP 170
T++ PC + + K G C + V+ PP PC+PG C C P
Sbjct: 606 TSQLPCPSG-SFAKDKRGANCTQCDRGH-KCPVSSDPPIPCDPGYYSDTTDATSCTQCSP 663
Query: 171 NYKLLSQDDERCVLTTDCP 227
Y +S C+ CP
Sbjct: 664 GYYAISSGQTSCI---QCP 679
>SB_56395| Best HMM Match : MACPF (HMM E-Value=0.00093)
Length = 385
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Frame = +3
Query: 3 NSSTAHNTTEGPCNA---NETLVSCKAGCPTDYCPTSDSRAVVACSPP----YPCNPG 155
N S N +G C + N T C TD P+SD A +A P Y C PG
Sbjct: 199 NFSFQANMDDGSCQSPTNNYTFGGVYQTCQTDGSPSSDPCASLAQKNPLTADYTCTPG 256
>SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06)
Length = 229
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 509 NTYFWNPTVLRYNHIPVCHASRDSSY 432
+TYFWN +Y+H+ + D Y
Sbjct: 101 DTYFWNVKRSKYHHVTHAYTKNDLDY 126
>SB_30068| Best HMM Match : MoeA_C (HMM E-Value=2.9e-15)
Length = 158
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -3
Query: 463 RYVTLLAILRTLIYVATFLSGNADSAIVPEVIIFADASR 347
+YV L +LR LIY+A+ +GN SA+V + A R
Sbjct: 30 KYVATLVVLRDLIYLAS--TGNPVSAMVTFYLFVLPALR 66
>SB_11968| Best HMM Match : zf-TRAF (HMM E-Value=0.32)
Length = 144
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 48 NETLVSCK-AGCPTDYCPTSDSRAVVACSPPYPCNPGC 158
+E LV C+ GCP + ++ C C PGC
Sbjct: 73 DERLVRCENVGCPMRIAHRGQAAQILECQYQVVCCPGC 110
>SB_6171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 830
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 461 PECGYNEVLSDSKNKCSPSDL*EH 532
PECG++ L +CS DL +H
Sbjct: 661 PECGFDNELCTPAGQCSKGDLEDH 684
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,166,682
Number of Sequences: 59808
Number of extensions: 468733
Number of successful extensions: 1747
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1737
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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