Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0691.Seq
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02890.1 68416.m00284 PHD finger protein-related contains low...    31   0.83 
At5g53490.2 68418.m06648 thylakoid lumenal 17.4 kDa protein, chl...    30   1.4  
At5g53490.1 68418.m06647 thylakoid lumenal 17.4 kDa protein, chl...    30   1.4  
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains...    28   5.8  
At5g54000.1 68418.m06717 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   7.7  
At2g36720.1 68415.m04505 PHD finger transcription factor, putative     27   7.7  

>At3g02890.1 68416.m00284 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 963

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 22/58 (37%), Positives = 25/58 (43%)
 Frame = +3

Query: 228 PVNCTRPNESGARHHRPVYKKPAMMSTLLRYLVTSLYKAALDASAKIITSGTIAESAF 401
           P +C  PN    RH  P  KK     TL R  + S  K   DA      SGT  E+AF
Sbjct: 818 PASCVSPNRDTFRHENPSNKKSLTDRTLSR--MQSCMKEE-DAKEGKACSGTEKENAF 872


>At5g53490.2 68418.m06648 thylakoid lumenal 17.4 kDa protein,
           chloroplast identical to SP:P81760 Thylakoid lumenal
           17.4 kDa protein, chloroplast precursor (P17.4)
           {Arabidopsis thaliana}
          Length = 235

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 384 IAESAFPLRNVAT*MSVRRIARSVTYRNVVITKYCRIPKISVPPQTCESIY 536
           + +S FPL+ + +       A ++T  + VI    R+P +S  P  CE  +
Sbjct: 45  VKKSLFPLKELGSIACAALCACTLTIASPVIAANQRLPPLSTEPDRCEKAF 95


>At5g53490.1 68418.m06647 thylakoid lumenal 17.4 kDa protein,
           chloroplast identical to SP:P81760 Thylakoid lumenal
           17.4 kDa protein, chloroplast precursor (P17.4)
           {Arabidopsis thaliana}
          Length = 236

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 384 IAESAFPLRNVAT*MSVRRIARSVTYRNVVITKYCRIPKISVPPQTCESIY 536
           + +S FPL+ + +       A ++T  + VI    R+P +S  P  CE  +
Sbjct: 46  VKKSLFPLKELGSIACAALCACTLTIASPVIAANQRLPPLSTEPDRCEKAF 96


>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 478

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 183 RAYNLVYKRSPDYTGRGASK 124
           R  N VY R P+YTG G SK
Sbjct: 37  RDSNFVYIRFPEYTGEGLSK 56


>At5g54000.1 68418.m06717 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to  Flavonol synthase (EC
           1.14.11.-) (FLS) from Lisianthus russellianus] {Eustoma
           grandiflorum} [SP|Q9M547], Leucoanthocyanidin
           dioxygenase (LDOX) (Leucoanthocyanidin hydroxylase)
           (Anthocyanidin synthase) from Malus spp. [SP|P51091];
           contains Pfam profile PF03171: oxidoreductase,
           2OG-Fe(II) oxygenase family
          Length = 349

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 427 IYVATFLSGNADSAIVPEVIIFADASRAALYKLVTRYRSN 308
           IYVATF + + D  I P   + ++A R  LYK V +   N
Sbjct: 294 IYVATFCNADEDKEIQPLNGLVSEA-RPRLYKAVKKSEKN 332


>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
          Length = 1007

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 324 VTSLYKAALDASAKIITSGTIAESAFPLRNVAT*MSVRRIARSVTYRNVVIT 479
           V  L++  L     ++  GT+   AFPLR +     +     S  + NV+ T
Sbjct: 264 VRDLFETGLLDGLSVVYMGTVKSQAFPLRGIIRDGGILCSCSSCDWANVIST 315


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,662,335
Number of Sequences: 28952
Number of extensions: 305563
Number of successful extensions: 801
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)