Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0690.Seq
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1098 - 30395704-30395837,30396644-30396751,30396933-303971... 67 9e-12
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910... 45 6e-05
02_05_0873 - 32372143-32372287,32372678-32372754,32372863-323730... 44 1e-04
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312 43 2e-04
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846... 42 4e-04
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442... 42 5e-04
08_02_1381 - 26551920-26552053,26552963-26553070,26553154-265533... 38 0.006
06_01_0751 + 5630036-5630233,5630623-5630718,5631420-5631629,563... 33 0.14
08_02_0963 + 23068851-23069042,23069262-23069414,23069590-230696... 31 0.96
07_03_0647 - 20253380-20253505,20253718-20253727,20253864-202539... 28 5.1
07_03_0642 - 20216944-20217069,20217282-20217291,20217428-202175... 28 5.1
>03_05_1098 -
30395704-30395837,30396644-30396751,30396933-30397119,
30398127-30398330
Length = 210
Score = 67.3 bits (157), Expect = 9e-12
Identities = 33/118 (27%), Positives = 59/118 (50%)
Frame = +1
Query: 259 IDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQ 438
ID+ + P GN ++ + +S + F AP G Y +CF N + P+ V F + +G
Sbjct: 65 IDLTVTSPGGNTVYTLKGKSGDKFEFKAPRGGMYKFCFHNPYGA--PETVSFYIHVGHIP 122
Query: 439 TKSGNENEADHNKLEDMIKELATN*RTIKHDQEYMQVRDRIHRSINESTNXRVVMWSI 612
+ + + + I EL ++ +Q+Y++ R+ HR NEST RV+ ++I
Sbjct: 123 NEHNLAKDEHLDPINVKIAELKEALESVTAEQKYLKAREARHRHTNESTRRRVMFYTI 180
>07_03_1385 +
26189034-26189294,26189427-26189636,26191016-26191092,
26191196-26191340
Length = 230
Score = 44.8 bits (101), Expect = 6e-05
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Frame = +1
Query: 259 IDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQ 438
I + + P GN +H AE SG + F+A AG Y CF P + F +
Sbjct: 84 ISLRVTSPYGNSVHYAENVPSGNFAFTATEAGDYLACFW-APDHKPPVSIGFEFDWRSGV 142
Query: 439 TKSGNENEADHNKLEDM---IKELATN*RTIKHDQEYMQVRDRIHRSINESTNXRV 597
N A +++ M +K+L ++I + Y++ R+ +++N+ TN R+
Sbjct: 143 AAKDWSNVAKKGQVDVMEMELKKLEETIKSIHEEMFYLREREEEMQNLNKQTNSRM 198
>02_05_0873 -
32372143-32372287,32372678-32372754,32372863-32373072,
32374645-32374869
Length = 218
Score = 43.6 bits (98), Expect = 1e-04
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Frame = +1
Query: 259 IDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQ 438
I V + P GN +H E + G + F+ AG Y CF S+ + NL+
Sbjct: 72 IAVKVTSPYGNTLHHNENATVGQFAFTTSEAGNYLACFWID-SAEKGSGISINLDWKIGI 130
Query: 439 TKSGNENEADHNKLEDM---IKELATN*RTIKHDQEYMQVRDRIHRSINESTNXRVVMWS 609
+ A K+E + +++L ++I + Y++ R+ R+++E TN RV +S
Sbjct: 131 AAKDWDVIAKKEKIEGVELELRKLEVAVQSIHQNMIYLKAREAEMRTVSEKTNARVAWFS 190
Query: 610 I 612
I
Sbjct: 191 I 191
>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
Length = 232
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Frame = +1
Query: 259 IDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKV-VMFNLEIG-- 429
+ + + P GN +H +E SG + F+A AG Y CF T V F+ G
Sbjct: 86 VSLRVTSPYGNSLHYSENVQSGNFAFTASEAGDYLACFWAPDHRPTATVGFEFDWRSGVS 145
Query: 430 -EPQTKSGNENEADHNKLEDMIKELATN*RTIKHDQEYMQVRDRIHRSINESTNXRVVMW 606
T + + D ++E +K+L +I + Y++ R+ + +N TN R+
Sbjct: 146 ARDWTNVAKKGQVDMMEVE--LKKLEDTINSIHEEMFYLRAREEEMQELNRRTNSRMAWL 203
Query: 607 SIF 615
F
Sbjct: 204 GFF 206
>09_04_0676 -
19383757-19383890,19384308-19384415,19384493-19384679,
19384937-19385143
Length = 211
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/119 (21%), Positives = 56/119 (47%)
Frame = +1
Query: 259 IDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQ 438
+D+++ P+GN IH + + S + F G + +CF+NK S + V F++ +
Sbjct: 66 VDLVVRDPNGNQIHDSRDKISDKFEFIVHRRGVHRFCFTNK--SPYHETVDFDVLVSHFS 123
Query: 439 TKSGNENEADHNKLEDMIKELATN*RTIKHDQEYMQVRDRIHRSINESTNXRVVMWSIF 615
+ + + L + I +L I+ +Q +++ + +NE+ + R V + F
Sbjct: 124 YYDQHAKDEHFSALFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAVHKAFF 182
>09_04_0359 +
16941904-16942110,16943636-16943785,16944084-16944293,
16944376-16944452,16944554-16944698
Length = 262
Score = 41.5 bits (93), Expect = 5e-04
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Frame = +1
Query: 271 ILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSG 450
+ P G+++H ++ S+G ++F+ AG Y CFS + VV NL+
Sbjct: 120 VTSPFGDIVHHKQKVSTGQFSFTTAEAGNYLACFSADGRNKR-LVVKLNLDWRVGIATKD 178
Query: 451 NENEADHNKLEDM---IKELATN*RTIKHDQEYMQVRDRIHRSINESTNXRVVMWSI 612
++ A KLE + + +L T+ + I + ++ ++ R +E TN R SI
Sbjct: 179 WDSVAKKEKLEGVELELVKLETSVQAIHENLLLLRSKEANMRDTSEKTNARATWLSI 235
>08_02_1381 -
26551920-26552053,26552963-26553070,26553154-26553340,
26554107-26554316
Length = 212
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/114 (20%), Positives = 53/114 (46%)
Frame = +1
Query: 259 IDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQ 438
+D+++ P+G + + ++S + F G + +CF+NK S + V F++ +G
Sbjct: 67 VDLVVKDPNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK--SPYHETVDFDVHVGHFS 124
Query: 439 TKSGNENEADHNKLEDMIKELATN*RTIKHDQEYMQVRDRIHRSINESTNXRVV 600
+ + L + I +L I+ +Q +++ + +NE+ + R V
Sbjct: 125 YFDQHAKDEHFAPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAV 178
>06_01_0751 +
5630036-5630233,5630623-5630718,5631420-5631629,
5631735-5631811,5632204-5632222,5632304-5632348
Length = 214
Score = 33.5 bits (73), Expect = 0.14
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Frame = +1
Query: 271 ILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSG 450
+ P GN +H E ++G + F+ AG Y CF S V NL+
Sbjct: 99 VTSPYGNTVHHNENATTGQFAFTTSEAGNYLACFWLD-SPEKGSGVSLNLDWKIGIAAKD 157
Query: 451 NENEADHNKLEDM---IKELATN*RTIKHDQEYMQVRDRIHRSI 573
+ A K+E + +++L +I H+ Y++ R+ R++
Sbjct: 158 WDTVAKKEKIEGVELELRKLEAAVESIHHNLLYLKAREAEMRTL 201
>08_02_0963 +
23068851-23069042,23069262-23069414,23069590-23069666,
23069744-23069762,23070182-23070202
Length = 153
Score = 30.7 bits (66), Expect = 0.96
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 271 ILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFS 375
+ P G V+H E+ G ++F+ G Y CFS
Sbjct: 73 VTSPYGKVLHHREKVMQGQFSFNTAEPGVYLACFS 107
>07_03_0647 -
20253380-20253505,20253718-20253727,20253864-20253977,
20254063-20254382
Length = 189
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 352 GKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENE 462
GK S ++S+TP+V + + G+PQ K GN +
Sbjct: 34 GKVKRSDSVPVASITPRVALQTVNGGKPQRKHGNRQQ 70
>07_03_0642 -
20216944-20217069,20217282-20217291,20217428-20217541,
20217627-20217946
Length = 189
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 352 GKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENE 462
GK S ++S+TP+V + + G+PQ K GN +
Sbjct: 34 GKVKRSDSVPVASITPRVALQTVNGGKPQRKHGNRQQ 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,415,804
Number of Sequences: 37544
Number of extensions: 295725
Number of successful extensions: 606
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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