Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0690.Seq
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53257| Best HMM Match : No HMM Matches (HMM E-Value=.)             157   9e-39
SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13)            48   5e-06
SB_55278| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   6e-06
SB_11345| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.034
SB_3525| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)                    28   5.2  
SB_40246| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_3219| Best HMM Match : Ribosomal_L31 (HMM E-Value=1.7)              27   9.1  
SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)                   27   9.1  
SB_1635| Best HMM Match : S1FA (HMM E-Value=1.6)                       27   9.1  

>SB_53257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score =  157 bits (380), Expect = 9e-39
 Identities = 72/133 (54%), Positives = 97/133 (72%)
 Frame = +1

Query: 217 IGIIV*NSRRRFLDIDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMT 396
           +G+I   +   FLDIDV I+GPD  VI+  ERE+SG YTF+A   G Y YCFSNKMS+MT
Sbjct: 1   MGLIFEVAEGGFLDIDVKIIGPDQKVIYSGERETSGKYTFAAHMDGTYNYCFSNKMSTMT 60

Query: 397 PKVVMFNLEIGEPQTKSGNENEADHNKLEDMIKELATN*RTIKHDQEYMQVRDRIHRSIN 576
           PKV+ F+++IGE    +  E+ A H+KL +M+ +L+     +KH+QEYM+VR+RIHRSIN
Sbjct: 61  PKVLKFSMDIGEAPKDTSKEDNAGHDKLSEMVSQLSEAMTGVKHEQEYMEVRERIHRSIN 120

Query: 577 ESTNXRVVMWSIF 615
           ++TN RVV WS F
Sbjct: 121 DNTNSRVVWWSFF 133


>SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13)
          Length = 348

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
 Frame = +1

Query: 253 LDIDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCF---SNKMSSMTPKVVMFNLE 423
           + + V +  P+G +I      S G +TF++ T G++  C    S + S      +  +L+
Sbjct: 196 IGMHVEVKDPNGKIIMSKYYSSEGRFTFTSHTPGEHVICLHSNSTRWSLWAGGRLRIHLD 255

Query: 424 IGEPQTKSGNENEADHNKLEDM---IKELATN*RTIKHDQEYMQVRDRIHRSINESTNXR 594
           I   +  +     A  +KL ++   I++L      I  +Q Y + R+   R  +ESTN R
Sbjct: 256 IQVGEHANDYAQIAAKDKLTELQLRIRQLLDQVEQISKEQNYQRFREERFRMTSESTNQR 315

Query: 595 VVMWSI 612
           V+ W++
Sbjct: 316 VLWWAL 321


>SB_55278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 28/103 (27%), Positives = 50/103 (48%)
 Frame = +1

Query: 256 DIDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEP 435
           D+DVI+   +   ++  +++    +TF+    G Y +CFSN+ S+++ K V F+ + GE 
Sbjct: 61  DVDVILYDINEKELYSVQKKQYDSHTFTVEQPGIYKFCFSNEFSTISHKTVYFDFQSGE- 119

Query: 436 QTKSGNENEADHNKLEDMIKELATN*RTIKHDQEYMQVRDRIH 564
           +T+        H  L  M     T    +K   +Y Q   R+H
Sbjct: 120 ETQLTKTMGNHHTALTQMETACVTIHENLKIAIDY-QTHHRLH 161



 Score = 34.3 bits (75), Expect = 0.080
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 113 VVTLLNLVSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGG 250
           V+ L  ++ +    T  ++ +A +CFYE ++ D K  L F++  GG
Sbjct: 13  VLALSCILVSCTELTFELEDNARQCFYEELKKDAKATLEFQVITGG 58


>SB_11345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 7/127 (5%)
 Frame = +1

Query: 253 LDIDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEI-- 426
           LDI   +  P G +  +    +   ++      G+Y +CF N  S++  K +  +L +  
Sbjct: 89  LDIGFTLQAPSGKIAIEDGHRTDEAHSLVTEEEGEYEFCFDNTFSTVASKAIFADLGVDF 148

Query: 427 -GEPQTKSGNENEADHNKLEDMIKELATN*RT----IKHDQEYMQVRDRIHRSINESTNX 591
             + Q   G ++E     L D       N R      +H Q ++         + +S + 
Sbjct: 149 EDDIQKMIGIKDENLEEDLHDRFVRTLENVRVDLDKAEHIQNFISSAAARDFRLAKSKDS 208

Query: 592 RVVMWSI 612
           RV  WS+
Sbjct: 209 RVFWWSL 215


>SB_3525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 256 LETSFCYFKR*SQFGIGFYIFVKALFGMCINCDC 155
           +E  +C+FKR   +G    I  K   G+C+NC C
Sbjct: 14  IEEMWCFFKR---YGRYIVISSKMCTGICLNCIC 44


>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
          Length = 734

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -2

Query: 600 HH--TXICTFIY*TMDTITHLHILLIVFDSSLISSKFFDHVLKFIMVSFVFITRFSLWFS 427
           HH  +  CT I+      TH H L + F S+LI +    H L F   + + +     W++
Sbjct: 386 HHALSFTCTLIH------THSHSLALSFTSTLIHTHSHSHALSFTR-TIIHMHSPDPWYA 438

Query: 426 DFKIEHYH 403
              + HYH
Sbjct: 439 PATV-HYH 445


>SB_40246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 748

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 478 LEDMIKELATN*RTIKHDQEYMQVRDRIHRSINESTNXRVVMWSIF 615
           LED   EL T+ + I  DQE  +   R+   +NE+ N ++   S F
Sbjct: 70  LEDFKYELHTSLQVIFCDQEMGEGAKRLQSYVNENDNSKIQNQSYF 115


>SB_3219| Best HMM Match : Ribosomal_L31 (HMM E-Value=1.7)
          Length = 528

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 18  ARSNVKNQNKTKIVCDYSHLIK 83
           AR N  N  + +I CDY+H IK
Sbjct: 185 ARRNTTNAKQRRISCDYAHGIK 206


>SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)
          Length = 829

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 277 GPDGNVIHKAERESSGIYTFS-APTAGKYTYCFSNKMS 387
           GPDG    KAE ESS I   S   TAG+  Y  S+  S
Sbjct: 780 GPDGAEATKAEEESSDIECDSDTSTAGRIDYRASSPSS 817


>SB_1635| Best HMM Match : S1FA (HMM E-Value=1.6)
          Length = 148

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 277 GPDGNVIHKAERESSGIYTFS-APTAGKYTYCFSNKMS 387
           GPDG    KAE ESS I   S   TAG+  Y  S+  S
Sbjct: 99  GPDGAEATKAEEESSDIECDSDTSTAGRIDYRASSPSS 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,515,268
Number of Sequences: 59808
Number of extensions: 362964
Number of successful extensions: 799
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)