Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0690.Seq
(616 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF014940-5|AAB63937.1| 203|Caenorhabditis elegans Suppressor/en... 157 4e-39
AF039713-7|AAB96722.1| 203|Caenorhabditis elegans Hypothetical ... 66 2e-11
AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical ... 48 4e-06
Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical pr... 35 0.053
Z68316-4|CAA92683.1| 234|Caenorhabditis elegans Hypothetical pr... 33 0.16
AF100673-4|AAP13734.2| 438|Caenorhabditis elegans Hypothetical ... 30 1.1
U80838-5|AAT48617.1| 317|Caenorhabditis elegans Hypothetical pr... 29 2.0
U23450-6|AAK31469.1| 790|Caenorhabditis elegans Hypothetical pr... 28 6.1
AL021346-2|CAB63233.1| 419|Caenorhabditis elegans Hypothetical ... 28 6.1
U55857-4|AAA98029.1| 301|Caenorhabditis elegans Hypothetical pr... 27 8.1
AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical ... 27 8.1
>AF014940-5|AAB63937.1| 203|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein9 protein.
Length = 203
Score = 157 bits (382), Expect = 4e-39
Identities = 73/126 (57%), Positives = 97/126 (76%), Gaps = 4/126 (3%)
Frame = +1
Query: 250 FLDIDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIG 429
FLDIDV I GPD I+K ERESSG +TF+A G YTYCF NKMS+MTPK VMF +EI
Sbjct: 52 FLDIDVKITGPDNKEIYKGERESSGKFTFAAHMDGVYTYCFGNKMSTMTPKAVMFTVEIT 111
Query: 430 EPQTK----SGNENEADHNKLEDMIKELATN*RTIKHDQEYMQVRDRIHRSINESTNXRV 597
EP + + N++ AD+ KLE+M++EL++ ++KH+QEYM+VR+R+HR+INE+TN RV
Sbjct: 112 EPHQQAPGAAANQDAADNAKLEEMVRELSSALMSVKHEQEYMEVRERVHRNINENTNSRV 171
Query: 598 VMWSIF 615
VMW+ F
Sbjct: 172 VMWAAF 177
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/49 (46%), Positives = 35/49 (71%)
Frame = +2
Query: 107 WLVVTLLNLVSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGGF 253
W++ L V+ A SY + VDA+ E+CF++ + + TK+GL FE+AEGGF
Sbjct: 6 WILAVLF--VTPAASYFIHVDANEEQCFFDRLTSGTKMGLMFEVAEGGF 52
>AF039713-7|AAB96722.1| 203|Caenorhabditis elegans Hypothetical
protein F57B10.5 protein.
Length = 203
Score = 65.7 bits (153), Expect = 2e-11
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Frame = +1
Query: 256 DIDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEP 435
D+D+II P+G V++K ++ F A G Y CFSN+ S+ + K+V + + G+
Sbjct: 55 DVDLIIEDPNGKVLYKDTKKQYDSINFKAEVEGTYKACFSNEFSTFSHKIVYMDWQFGDQ 114
Query: 436 QTKSGNENEADH--NKLEDMIKELATN*RTIKHDQEYMQVRDRIHRSINESTNXRVVMWS 609
+ H +LE+ + RTI Q + ++R+ R E N RV++WS
Sbjct: 115 NALHAAVTQGAHAMTQLENYAVAIGDKLRTIDDYQTHHRLREATGRKRAEELNERVMIWS 174
Query: 610 I 612
+
Sbjct: 175 L 175
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 110 LVVTLLNLVSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGG 250
+V ++L + + T + +A +CFYE+++ D F++ GG
Sbjct: 6 IVSSILVALGLSIELTFELPDNANQCFYEDLKKDVDTVFEFQVVTGG 52
>AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical
protein Y60A3A.9 protein.
Length = 211
Score = 48.4 bits (110), Expect = 4e-06
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Frame = +1
Query: 253 LDIDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYC-FSNKMSSMTPKVVMFNLEIG 429
+ + V + P+ VI + G +TF++ T G++ C +SN + + +L+I
Sbjct: 61 IGMHVEVKDPEDKVILSKLYTAEGRFTFTSNTPGEHVICIYSNSTAWFNGAQLRVHLDIQ 120
Query: 430 EPQTKSGNENEADHNKLEDM---IKELATN*RTIKHDQEYMQVRDRIHRSINESTNXRVV 600
A +KL ++ I++L I +Q Y + R+ R +ESTN RV
Sbjct: 121 AGDHAQDYAQIAQKDKLNELQLRIRQLLDQVDQITKEQNYQRYREERFRQTSESTNSRVF 180
Query: 601 MWSI 612
WSI
Sbjct: 181 YWSI 184
>Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical
protein F47G9.1 protein.
Length = 204
Score = 34.7 bits (76), Expect = 0.053
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Frame = +1
Query: 286 GNVIHKAER--ESSGIYTFSAPTAGKYTYCFSNKMSSMTP---KVVMFNLEIGEPQTKSG 450
G+ ++K E + G + F+A + C N + P + V L+ G
Sbjct: 62 GHTLYKRENFADLKGKFAFTADEYDIFEICIENHPPAGHPGEKREVSLILKHGVEAKNYD 121
Query: 451 NENEADHNK-LEDMIKELATN*RTIKHDQEYMQVRDRIHRSINESTNXRVVMWSIF 615
+ +A+ K LE ++ L +I D +M+ R+ R+ NESTN RV+ SIF
Sbjct: 122 DIAKAEKLKPLEVELRRLEDMADSITKDFAFMRQREEEMRNTNESTNSRVLYLSIF 177
>Z68316-4|CAA92683.1| 234|Caenorhabditis elegans Hypothetical
protein K08E4.6 protein.
Length = 234
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +1
Query: 253 LDIDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGE 432
L+I+ +IL N++ + + + G + G Y CF N S + KVV F + + +
Sbjct: 61 LNINFMILH-GANILKQDQLKVDGSHRIELNQPGDYQVCFDNSFSYQSRKVVFFEIFLFD 119
Query: 433 PQTKSGNENEAD 468
GN +EAD
Sbjct: 120 AH---GNLDEAD 128
>AF100673-4|AAP13734.2| 438|Caenorhabditis elegans Hypothetical
protein Y66H1B.5 protein.
Length = 438
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +1
Query: 259 IDVIILGPDGN--VIHKAERESSGIYTFSAPT--AGKYTYCFSNKMSSMTPKVVMFNLEI 426
I+ + GPDG + H E +GIY S PT AG+Y F + +V + +I
Sbjct: 280 IESRVFGPDGKERLNHVRSTEQNGIYDVSFPTDMAGEYCVVFYINGQEVAARVPVMAEKI 339
Query: 427 GEPQ 438
G +
Sbjct: 340 GRKE 343
>U80838-5|AAT48617.1| 317|Caenorhabditis elegans Hypothetical
protein F47F6.9 protein.
Length = 317
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 537 LLIVFDSS-LISSKFFDHVLKFIMVSFVFITRFSLWFSDFKIEHYHLG 397
+LI +DS + FD+VL + +V + S +FS F+I HY G
Sbjct: 156 ILINYDSEKCLCGNIFDYVLSTTSIHWVDLHILSRFFSCFEICHYREG 203
>U23450-6|AAK31469.1| 790|Caenorhabditis elegans Hypothetical
protein C30B5.5 protein.
Length = 790
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -2
Query: 534 LIVFDSSLISSKFFDHVLKFIMVSFVFITRFSLW--FSDFKIEHYHLGCHG*HFITEAIS 361
L VFDS L+ + FF + +++I+ + W + F H+ G +IT A++
Sbjct: 74 LAVFDSCLLITAFFIYAMEYIIEYTAAFDLYVAWLTYLRFAFALSHISQTGSVYITVAVT 133
Query: 360 I 358
I
Sbjct: 134 I 134
>AL021346-2|CAB63233.1| 419|Caenorhabditis elegans Hypothetical
protein H37A05.2 protein.
Length = 419
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 358 YTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENEADHNKLEDMIKELAT 507
Y CF + M P ++ F++++GE N NE K+ +I++L T
Sbjct: 360 YELCFPASVILMLPFILSFSVKLGE------NINEESVEKMAGLIEDLVT 403
>U55857-4|AAA98029.1| 301|Caenorhabditis elegans Hypothetical
protein K08D10.7 protein.
Length = 301
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 486 VLKFIMVSFVFITRFSLWFSDFKIEHYHLGCHG 388
+LK ++V+ VF+ F+ + + H+H G HG
Sbjct: 263 ILKLLLVTSVFLIDFTYFEDRNQDRHHHGGMHG 295
>AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical
protein C35A11.4 protein.
Length = 515
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 534 LIVFDSSLISSKFFDHVLKFIMVSFVFITRF 442
LI+F KF +HVL FI++ F+ I F
Sbjct: 348 LIIFALMFTFYKFENHVLGFILICFICIFTF 378
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,107,433
Number of Sequences: 27780
Number of extensions: 292171
Number of successful extensions: 763
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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