Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0690.Seq
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    25   0.59 
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    25   0.59 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.6  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +1

Query: 355 KYTYCFSNKMSSMTPKVVMFNLEIGEP-QTKSGNENEADHNKLEDMIKELATN 510
           +Y  CF +  S +TP  V F   I E  QT+     E     L+ + +   TN
Sbjct: 44  QYYDCFIDAGSCLTPDSVFFKSHITEAFQTQCKKCTEIQKQNLDKLAEWFTTN 96


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +1

Query: 355 KYTYCFSNKMSSMTPKVVMFNLEIGEP-QTKSGNENEADHNKLEDMIKELATN 510
           +Y  CF +  S +TP  V F   I E  QT+     E     L+ + +   TN
Sbjct: 44  QYYDCFIDAGSCLTPDSVFFKSHITEAFQTQCKKCTEIQKQNLDKLAEWFTTN 96


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 323 PDDSLSAL*MTLPSGPSIITSISR 252
           PD  + A   TLPS PS +T  S+
Sbjct: 664 PDSFIEAPNKTLPSLPSTLTKNSK 687


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -1

Query: 265 HQYLETSFCYFKR 227
           + + + +FCYF+R
Sbjct: 531 YNWFQNTFCYFRR 543


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,594
Number of Sequences: 438
Number of extensions: 3615
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)