Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0688.Seq
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   1.1  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    25   3.4  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   6.0  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   6.0  

>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 7   RSSNIXANGPNSFRSQFSQWKPSEL*CLS 93
           R+ N     P  F  ++S+WKP +L  LS
Sbjct: 223 RNENKKPKNPQLFALKYSEWKPGQLAVLS 251


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 165 TLVYILLGFLGYLRFGEEVQDSITLSLGDXSL 260
           TL+Y+L+   GYL FG     +I     + S+
Sbjct: 249 TLLYLLVAITGYLSFGSLASGNIIAMYDNTSI 280


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 355  LNTVPHNVDAHEELQAKSAV 296
            L+TV  NV A  ELQAKS++
Sbjct: 1117 LSTVLSNVSAIAELQAKSSI 1136


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 15  KHPSEWPEFFSLTIFAMEAIGVVMPLENSMKTPRA 119
           K P+  PE  SL+ + M++     P +N+M+ P +
Sbjct: 22  KRPTMLPENLSLSNYDMDSFLGQFPSDNNMQLPHS 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,603,194
Number of Sequences: 5004
Number of extensions: 29676
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)